Evidence map›Paper›PMID 42212655›Full record

ArticleMicrobiology resource announcements2026

Pangenomes of the human oral microbiome.

Julian Torres-Morales, Jonathan J Giacomini, Tsute Chen, Andrew Voorhis, Kathryn M Kauffman, Floyd E Dewhirst, Gary G Borisy, Jessica L Mark Welch

Abstract read
In one paragraph

Article in Microbiology resource announcements, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Julian Torres-MoralesADA Forsyth Institute, Somerville, Massachusetts, USA.ORCID 0000-0002-2989-2175
Jonathan J GiacominiADA Forsyth Institute, Somerville, Massachusetts, USA.ORCID 0000-0002-0151-894X
Tsute ChenADA Forsyth Institute, Somerville, Massachusetts, USA.ORCID 0000-0001-6689-317X
Andrew VoorhisMarine Biological Laboratory, Woods Hole, Massachusetts, USA.ORCID 0009-0003-4159-3164
Kathryn M KauffmanDepartment of Oral Biology, School of Dental Medicine, The University at Buffalo, Buffalo, New York, USA.ORCID 0000-0002-1997-947X
Floyd E DewhirstADA Forsyth Institute, Somerville, Massachusetts, USA.ORCID 0000-0003-4427-7928
Gary G BorisyADA Forsyth Institute, Somerville, Massachusetts, USA.ORCID 0000-0002-0266-8018
Jessica L Mark WelchADA Forsyth Institute, Somerville, Massachusetts, USA.ORCID 0000-0003-0696-2334

Funding

Mouse Oral Microbiome DatabaseR37DE016937 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI DEWHIRST, FLOYD E · 2011 to 2020
$8.6M
Cloud-Based Machine Learning and Biomarker Visual Analytics for Salivary ProteomicsR01DE016937 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI DEWHIRST, FLOYD E, MARK WELCH, JESSICA LEIGH · 2021 to 2025
$6.7M
A Foundation for the Oral Microbiome and MetagenomeU01DE016937 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI DEWHIRST, FLOYD E · 2006 to 2010
$3.5M
Metapangenomics of the Oral MicrobiomeR01DE030136 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI BORISY, GARY G, DEWHIRST, FLOYD E · 2021 to 2025
$3.0M
Forsyth Collaborative Pilot Grant FSI_CP04NIDCR NIH HHS DE016937NIDCR NIH HHS DE030136NIDCR NIH HHS R01 DE016937NIDCR NIH HHS R01 DE030136NIDCR NIH HHS R37 DE016937NIDCR NIH HHS U01 DE016937
6 · The paper itself

Abstract

We announce the release of 579 pangenomes derived from 8,115 genomes curated by the Human Oral Microbiome Database, capturing shared and variable gene content across oral microbial taxa. This openly accessible resource supports both online and offline exploration, enabling systematic studies of microbial function, evolution, and community structure.

Indexed as

comparative genomicshuman microbiomelarge-scale genomicsoral microbiomepangenomes

Identifiers

PMID42212655
PMCPMC13348354

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.