Evidence map›Paper›PMID 42207690›Full record

ArticleJournal of clinical microbiology2026

Evaluation of new expert rules for the detection and differentiation of carbapenemase-producing Enterobacterales within the French epidemiological context.

Cécile Emeraud, Lélia Abad, Virginie Crolet, Sophie Dos Santos, Gaëlle Noel, Sarah Rivat, Gilles Zambardi, Laurent Dortet

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Cécile EmeraudTeam "Resist" UMR1184 "Immunology of Viral, Auto-Immune, Hematological and Bacterial diseases (IMVA-HB)", Faculty of Medicine, INSERM, Université Paris-Saclay, CEA, LabEx LERMIT, Le Kremlin-Bicêtre, France.ORCID 0009-0006-3595-6434
Lélia AbadbioMerieux SA, Marcy l'Etoile, France.
Virginie CroletBacteriology-Hygiene Unit, Bicêtre Hospital, Assistance Publique-Hôpitaux de Paris, Le Kremlin-Bicêtre, France.
Sophie Dos SantosBacteriology-Hygiene Unit, Bicêtre Hospital, Assistance Publique-Hôpitaux de Paris, Le Kremlin-Bicêtre, France.
Gaëlle NoelbioMerieux SA, Marcy l'Etoile, France.
Sarah RivatbioMerieux SA, Marcy l'Etoile, France.
Gilles ZambardibioMerieux SA, Marcy l'Etoile, France.
Laurent DortetTeam "Resist" UMR1184 "Immunology of Viral, Auto-Immune, Hematological and Bacterial diseases (IMVA-HB)", Faculty of Medicine, INSERM, Université Paris-Saclay, CEA, LabEx LERMIT, Le Kremlin-Bicêtre, France.ORCID 0000-0001-6596-7384

Funding

bioMérieuxFrench National Research Agency-France 2030 Program ANR-23-IAHU-0004
6 · The paper itself

Abstract

The increasing prevalence of carbapenemase-producing Enterobacterales (CPE) requires reliable diagnostic tools. This study evaluated the performance of the VITEK2 Advanced Expert System, a software interpretation program combined with VITEK2 AST results, for CPE detection, and the ability of BIOART expert rules to identify carbapenemase types. Antimicrobial susceptibility testing was performed using VITEK2 (N436 + XN28 cards) and disk diffusion on a collection of 244 isolates representative of French epidemiology, including 145 CPE, 51 non-CPE carbapenem-resistant Enterobacterales (CRE), and 48 non-CRE. A dedicated OXA-244/484 rule was assessed on a collection of 36 OXA-244/484 producers, known to be difficult to detect. The VITEK2 N436/AES and CA-SFM algorithm demonstrated similar sensitivities (93.8% vs 97.2%) and specificities (53.5% vs 49.5%) for CPE detection. Most detection errors involved OXA-244/484 producers. Application of the dedicated OXA-244/484 rule enabled 100% detection. BIOART rules identified the single carbapenemase class with no other mechanism reported in 83 cases, the correct class with additional mechanisms reported in 30 cases, and no carbapenemase class, or an incorrect carbapenemase class were assigned in 6 and 5 cases, respectively. Twelve isolates were outside the scope of BIOART rule (IMI or multiple carbapenemases). Single correct carbapenemase class assignment was achieved in 97.5% of NDM producers, 54.5% of OXA-48-like producers, and 57.1% of VIM producers. All KPC producers were correctly identified as KPC producers, although carbapenem impermeability was systematically co-reported, preventing single unambiguous assignment. The integrated VITEK2 AES/BIOART solution provides an efficient approach for CPE screening and classification, particularly for NDM and KPC-producers. IMPORTANCE: Rapid and reliable detection of carbapenemase-producing Enterobacterales (CPE) is essential for infection control, epidemiological surveillance, and optimized antimicrobial therapy. As the prevalence and diversity of carbapenemases increase, diagnostic tools capable not only of detecting CPE but also predicting carbapenemase classes are increasingly needed to guide treatment decisions. In Europe, the emergence of OXA-48-like variants such as OXA-244 and OXA-484, which exhibit low hydrolytic activity to carbapenems and temocillin, complicates routine phenotypic detection and may lead to diagnostic failure. This study evaluates an automated solution integrating the VITEK2 Advanced Expert System and BIOART expert rules for CPE detection and classification in a representative French epidemiological context. We demonstrate that this integrated approach provides accurate and rapid screening, with good performance for carbapenemase class prediction, particularly for NDM and KPC producers. The implementation of a dedicated rule significantly improves detection of difficult-to-identify OXA-244/OXA-484 producers, addressing an important diagnostic gap.

Indexed as

Bacterial Proteinsbeta-LactamasesCarbapenem-Resistant EnterobacteriaceaeEnterobacteriaceaeEnterobacteriaceae InfectionsExpert SystemsAnti-Bacterial AgentsFranceHumansMicrobial Sensitivity TestsSensitivity and SpecificitySoftwareAnti-Bacterial AgentsBacterial Proteinsbeta-Lactamasescarbapenemaseautomated ASTcarbapenemase-producing EnterobacteralesCA-SFMdisk diffusionOXA-244OXA-48-likeVITEK2

Identifiers

PMID42207690
PMCPMC13343967

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.