Evidence map›Paper›PMID 42204342›Full record

ArticleNature microbiology2026

Temperate phages enhance bacterial host fitness via RNA-guided flagellar remodelling.

Matt W G Walker, Egill Richard, Tanner Wiegand, Jing Wang, Zaofeng Yang, Americo A Casas-Ciniglio, Florian T Hoffmann, Hamna Shahnawaz, Ryan G Gaudet, Nicholas Arpaia and 2 more

Abstract read
In one paragraph

Article in Nature microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. A phage puts a new spin on bacterial flagella.Nature reviews. Microbiology · 2026
    Article
  2. A phage takes the wheel.Nature microbiology · 2026
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Matt W G Walker *Department of Biological Sciences, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-3345-8248
Egill Richard *Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-9776-6197
Tanner WiegandDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-0528-268X
Jing WangSimons Electron Microscopy Center, New York Structural Biology Center, New York, NY, USA.
Zaofeng YangDepartment of Microbiology and Immunology, Columbia University, New York, NY, USA.
Americo A Casas-CiniglioDepartment of Genetics and Development, Columbia University, New York, NY, USA.
Florian T HoffmannDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-0301-4259
Hamna ShahnawazDepartment of Microbiology and Immunology, Columbia University, New York, NY, USA.
Ryan G GaudetDepartment of Microbiology and Immunology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0001-8496-3653
Nicholas ArpaiaDepartment of Microbiology and Immunology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-0657-0528
Israel S FernándezIkerbasque, Basque Foundation for Science, Bilbao, Spain.ORCID http://orcid.org/0000-0001-7218-1603
Samuel H SternbergDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA. shsternberg@gmail.com.ORCID http://orcid.org/0000-0001-8240-9114

Funding

NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
Treating colon cancer by regulating intestinal immunity through microbial metabolismR01CA259634 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ARPAIA, NICHOLAS · 2021 to 2025
$2.8M
Decoding the Interferome by Mapping Genetic Interactions in Human TissueDP2AI177904 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Ryan Gilbert Gaudet · 2023 to 2026
$1.9M
Howard Hughes Medical InstituteNational Science Foundation (NSF) CAREER 2239685National Science Foundation (NSF) DGE-2036197NCI NIH HHS R01 CA259634NIAID NIH HHS DP2 AI177904NIGMS NIH HHS U24 GM129539Simons Foundation SF349247U.S. Department of Health & Human Services | National Institutes of Health (NIH) DP2AI177904U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01CA259634U.S. Department of Health & Human Services | National Institutes of Health (NIH) U24GM129539
6 · The paper itself

Abstract

Bacterial flagella drive motility and play crucial roles in host-pathogen interactions, as flagellin is recognized by the mammalian immune system and flagellotropic bacteriophages. We recently discovered a family of phage-encoded, RNA-guided transcription factors called TldR that regulate flagellin expression, but the importance of this regulation to host fitness was unclear. Here we use a human clinical Enterobacter isolate encoding a Flagellin Remodeling prophage (FRφ) to show that FRφ exploits TldR and its flagellin isoform to alter the flagellar composition and phenotypic properties of its host. This transformation enhances bacterial motility and mammalian immune evasion, and cryo-EM structures reveal distinct flagellin architectures underlying physiological changes. FRφ also improves colonization in the murine gut, illustrating the beneficial effect of prophage-mediated flagellar remodelling in a host-associated environment. Collectively, our results reveal how RNA-guided transcription factors emerged in a parallel evolutionary path to CRISPR-Cas and were co-opted by phages to remodel the flagellar apparatus and enhance host fitness.

Indexed as

BacteriophagesFlagellaFlagellinProphagesAnimalsCryoelectron MicroscopyGene Expression Regulation, BacterialHumansMiceTranscription FactorsFlagellinTranscription Factors

Identifiers

PMID42204342
PMCPMC13418256

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.