Evidence map›Paper›PMID 42204287›Full record

ArticleCommunications medicine2026

Revisiting definitions of hypervirulent and classical Klebsiella pneumoniae through virulence factors and disease phenotype.

Alfred Lok-Hang Lee, Carmen Li, Rita Wy Ng, Christopher Kc Lai, Peter Chi-Wai Yip, Wing Shan Lee, Lap-Tin Ho, Ingrid Yu-Ying Cheung, Viola Chi-Ying Chow, Margaret Ip

Abstract read
In one paragraph

Article in Communications medicine, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Molecular Characterization and Clinical Outcomes ofChildren (Basel, Switzerland) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Alfred Lok-Hang LeeDepartment of Microbiology, Prince of Wales Hospital, Sha Tin, Hong Kong, (SAR), China. llh849@ha.org.hk.
Carmen LiDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Sha Tin, Hong Kong, (SAR), China.ORCID http://orcid.org/0000-0002-6773-7002
Rita Wy NgDepartment of Microbiology, Prince of Wales Hospital, Sha Tin, Hong Kong, (SAR), China.
Christopher Kc LaiDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Sha Tin, Hong Kong, (SAR), China.ORCID http://orcid.org/0000-0001-8591-5944
Peter Chi-Wai YipDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Sha Tin, Hong Kong, (SAR), China.
Wing Shan LeeDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Sha Tin, Hong Kong, (SAR), China.
Lap-Tin HoIntensive Care Unit, North District Hospital, Sheung Shui, Hong Kong, (SAR), China.ORCID http://orcid.org/0000-0001-9627-4468
Ingrid Yu-Ying CheungDepartment of Microbiology, Prince of Wales Hospital, Sha Tin, Hong Kong, (SAR), China.
Viola Chi-Ying ChowDepartment of Microbiology, Prince of Wales Hospital, Sha Tin, Hong Kong, (SAR), China.
Margaret IpDepartment of Microbiology, Prince of Wales Hospital, Sha Tin, Hong Kong, (SAR), China. margaretip@cuhk.edu.hk.ORCID http://orcid.org/0000-0003-1291-6537

Funding

Food and Health Bureau of the Government of the Hong Kong Special Administrative Region | Health and Medical Research Fund (HMRF) CID-CUHK-CResearch Grants Council, University Grants Committee (RGC, UGC) T11-104/22-R
6 · The paper itself

Abstract

backgroundHypervirulent Klebsiella pneumoniae (hvKP) has been described as an invasive syndrome of liver abscess and metastatic infection in Asia, and this syndrome is emerging globally.

methodsThis study examined the association between disease phenotypes and genotypic markers of hypervirulence in 273 isolates of Klebsiella pneumoniae (KP) collected from invasive infections across three hospitals in Hong Kong between 2019 and 2023. Whole genome sequencing was analysed by Kleborate and Kaptive. Epidemiological background, disease phenotype, virulence genes, and antimicrobial susceptibility were analysed. Genotypically defined hvKP (g-hvKP) were defined as having iucA, iroB, rmpA, rmpA2, and peg-344. Others were defined as classical Klebsiella pneumoniae (cKP). Genome-wide association study (GWAS) was performed to identify additional genes associated with hvKP.

resultsThe commonest K types are K2 (13.9%) and K1 (10.6%). The commonest ST is ST 23 (8.8%). g-hvKP represents 20.8% of all isolates. The ESBL phenotype is more likely in cKP than g-hvKP (22% vs 9%, p = 0.04). g-hvKP are more susceptible to cephalosporins (p = 0.02) and fluoroquinolones (p = 0.01). Among liver abscess cases, 49% of them are c-KP. g-hvKP is associated with neither mortality, disease severity, nor metastatic infection. g-hvKP has a sensitivity of 46% and a specificity of 86% in detecting liver abscesses or metastatic infections. By omitting rmpA2, F1 score improves from 0.46 to 0.51. GWAS reveals cysH3, pfeA2, and aidA as additional candidate genes linked to hvKP.

conclusionSignificant overlap in disease phenotype exists between cKP and g-hvKP. Additional candidate genes linked to hvKP are cysH3, pfeA2, and aidA.

Identifiers

PMID42204287
PMCPMC13493853

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.