Evidence map›Paper›PMID 42199731›Full record

ArticleOphthalmology science2026

Deep Learning and Experimental Validation of BRCA1-Associated Protein-1 Missense Variant Pathogenicity in Uveal Melanoma.

Nikhil Davé, David J Taylor Gonzalez, Mak B Djulbegovic, Linda A Cernichiaro-Espinosa, Benjamin A King, Carol L Shields, Matthew W Wilson

Abstract read
In one paragraph

Article in Ophthalmology science, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nikhil DavéDepartment of Ophthalmology, Hamilton Eye Institute, University of Tennessee, Memphis, Tennessee.
David J Taylor GonzalezDepartment of Ophthalmology, Broward Health Medical Center, Pompano Beach, Florida.
Mak B DjulbegovicOcular Oncology Service, Wills Eye Hospital, Thomas Jefferson University, Philadelphia, Pennsylvania.
Linda A Cernichiaro-EspinosaDepartment of Ophthalmology, Hamilton Eye Institute, University of Tennessee, Memphis, Tennessee.
Benjamin A KingDepartment of Ophthalmology, Hamilton Eye Institute, University of Tennessee, Memphis, Tennessee.
Carol L ShieldsOcular Oncology Service, Wills Eye Hospital, Thomas Jefferson University, Philadelphia, Pennsylvania.
Matthew W WilsonDepartment of Ophthalmology, Hamilton Eye Institute, University of Tennessee, Memphis, Tennessee.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective: To benchmark the pathogenicity predictions of AlphaMissense, a deep learning model, against high-throughput functional scores from saturation genome editing (SGE) for all experimentally tested Design: Cross-sectional analytical study comparing computational predictions with experimentally derived functional classifications and clinical annotations. Subjects Participants and/or Controls: ClusteredAll 4619 Methods: Saturation genome editing log Main Outcome Measures: (1) Concordance between in silico predictors and SGE labels (area under ROC and PR curves); (2) agreement with ClinVar classifications; (3) structural clustering of high-risk residues. Results: Of the 4619 Conclusions: AlphaMissense aligns closely with the gold standard functional data for Financial Disclosures: Proprietary or commercial disclosure may be found in the Footnotes and Disclosures at the end of this article.

Indexed as

AlphaMissenseBAP1Saturation genome editingUveal melanomaVariant classification

Identifiers

PMID42199731
PMCPMC13199758

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.