Evidence map›Paper›PMID 42196367›Full record

ReviewInternational journal of molecular sciences2026

Digital Pathology and the AI-Based Quantification of the Tumor Microenvironment in Gastrointestinal Cancer: From Tumor Budding and Tumor-Infiltrating Lymphocytes to Tertiary Lymphoid Structures.

Justyna Łapińska, Klaudia Kasperczuk, Klaudia Kańczugowska, Aleksandra Gałan, Weronika Pająk, Jakub Kleinrok, Ryszard Sitarz, Jacek Baj, Agnieszka Korolczuk

Abstract readReview
In one paragraph

Review in International journal of molecular sciences, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Justyna ŁapińskaDepartment of Clinical Pathomorphology, Medical University of Lublin, Jaczewskiego 8b, 20-090 Lublin, Poland.ORCID 0009-0004-1569-8621
Klaudia KasperczukDepartment of Clinical Pathomorphology, Medical University of Lublin, Jaczewskiego 8b, 20-090 Lublin, Poland.ORCID 0009-0005-9597-0038
Klaudia KańczugowskaDepartment of Clinical Pathomorphology, Medical University of Lublin, Jaczewskiego 8b, 20-090 Lublin, Poland.ORCID 0009-0002-5655-1015
Aleksandra GałanStudent Scientific Society of Forensic Medicine, Department of Correct, Clinical and Imaging Anatomy, Medical University of Lublin, 20-810 Lublin, Poland.ORCID 0009-0004-9580-0912
Weronika PająkDepartment of Clinical Pathomorphology, Medical University of Lublin, Jaczewskiego 8b, 20-090 Lublin, Poland.ORCID 0009-0009-9616-0458
Jakub KleinrokDepartment of Clinical Pathomorphology, Medical University of Lublin, Jaczewskiego 8b, 20-090 Lublin, Poland.ORCID 0009-0006-3742-5696
Ryszard Sitarz1st Department of Psychiatry, Psychotherapy and Early Intervention, Medical University of Lublin, Gluska Street 1, 20-439 Lublin, Poland.
Jacek BajDepartment of Correct, Clinical and Imaging Anatomy, Medical University of Lublin, Jaczewskiego 4, 20-090 Lublin, Poland.ORCID 0000-0002-1372-8987
Agnieszka KorolczukDepartment of Clinical Pathomorphology, Medical University of Lublin, Jaczewskiego 8b, 20-090 Lublin, Poland.ORCID 0000-0003-1016-2735

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Advances in digital pathology and artificial intelligence (AI) are significantly transforming the approach to analyzing the tumor microenvironment (TME) in gastrointestinal cancers (GICs). The TME consists of tumor cells, stromal components, and immune cells. It plays a key role in disease progression, treatment response, and patient prognosis. This review discusses the most important TME biomarkers, such as tumor budding (TB), tumor-infiltrating lymphocytes (TILs), and tertiary lymphoid structures (TLSs), with emphasis on their prognostic and predictive significance. Traditional histopathological assessment of these parameters is limited by subjectivity, intraobserver variability, and time-consuming nature. In this context, AI-based tools enable automated, quantitative, and more reproducible analysis of entire histological sections. Deep learning models allow the accurate detection and classification of structures and also analysis of their spatial organization. They provide new biological insights unavailable in routine diagnostics. The integration of imaging data with molecular and clinical information leads to the development of personalized medicine. Despite numerous advantages, the implementation of AI in clinical practice continues to face challenges related to standardization, data availability, and model interpretability.

Indexed as

Artificial IntelligenceGastrointestinal NeoplasmsLymphocytes, Tumor-InfiltratingTertiary Lymphoid StructuresTumor MicroenvironmentBiomarkers, TumorDeep LearningHumansPrognosisBiomarkers, Tumorartificial intelligencedigital pathologygastrointestinal cancerstertiary lymphoid structurestumor-infiltrating lymphocytestumor microenvironment

Identifiers

PMID42196367
PMCPMC13208040

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.