Evidence map›Paper›PMID 42192477›Full record

SynthesisGenome medicine2026

Genome-wide association study reveals a novel tuberculosis susceptibility locus in multiple East Asian and European populations.

Xuling Chang, Zheng Li, Phan Vuong Khac Thai, Dang Thi Minh Ha, Nguyen Thuy Thuong Thuong, Denise Wee, Alya Sufiyah Binte Mohamed Subhan, Matthew Silcocks, Cynthia Bin Eng Chee, Nguyen Thi Quynh Nhu and 10 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Genome medicine, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Xuling ChangDepartment of Infectious Diseases, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne, Parkville, VIC, 3000, Australia. shirley.chang@unimelb.edu.au.ORCID 0000-0001-7471-4768
Zheng LiGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, 138672, Singapore.
Phan Vuong Khac ThaiPham Ngoc Thach Hospital, District 5, Ho Chi Minh City, Viet Nam.
Dang Thi Minh HaPham Ngoc Thach Hospital, District 5, Ho Chi Minh City, Viet Nam.
Nguyen Thuy Thuong ThuongOxford University Clinical Research Unit, District 5, Ho Chi Minh City, Viet Nam.
Denise WeeA*STAR Infectious Diseases Labs (A*STAR ID Labs), Agency for Science, Technology and Research (A*STAR), Singapore, 138648, Singapore.
Alya Sufiyah Binte Mohamed SubhanA*STAR Infectious Diseases Labs (A*STAR ID Labs), Agency for Science, Technology and Research (A*STAR), Singapore, 138648, Singapore.
Matthew SilcocksDepartment of Infectious Diseases, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne, Parkville, VIC, 3000, Australia.ORCID 0000-0002-1527-5168
Cynthia Bin Eng CheeTuberculosis Control Unit, Tan Tock Seng Hospital, Singapore, Singapore.
Nguyen Thi Quynh NhuOxford University Clinical Research Unit, District 5, Ho Chi Minh City, Viet Nam.
Chew-Kiat HengDepartment of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, 119228, Singapore.
Yik Ying TeoDepartment of Statistics and Applied Probability, National University of Singapore, Singapore, Singapore.
Amit SinghalA*STAR Infectious Diseases Labs (A*STAR ID Labs), Agency for Science, Technology and Research (A*STAR), Singapore, 138648, Singapore.
Stefan H OehlersA*STAR Infectious Diseases Labs (A*STAR ID Labs), Agency for Science, Technology and Research (A*STAR), Singapore, 138648, Singapore.
Jian-Min YuanCancer Epidemiology and Prevention Program, University of Pittsburgh Medical Centre (UPMC) Hillman Cancer Center, Pittsburgh, PA, 15232, USA.
Woon-Puay KohHealthy Longevity Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, 117545, Singapore.
Maxine CawsDepartment of Clinical Sciences, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK.
Chiea Chuen KhorGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, 138672, Singapore.
Rajkumar DorajooDepartment of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, 119228, Singapore.
Sarah J DunstanDepartment of Infectious Diseases, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne, Parkville, VIC, 3000, Australia. sarah.dunstan@unimelb.edu.au.ORCID 0000-0001-7873-933X

Funding

Prospective studies of cancer etiology and prevention in Shanghai and SingaporeR01CA144034 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YUAN, JIAN-MIN · 2010 to 2014
$7.0M
Cancer epidemiology cohorts in Shanghai and Singapore UM1CA182876 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YUAN, JIAN-MIN · 2014 to 2018
$4.3M
National Health and Medical Research Council, Australia Investigator grant APP1172853NCI NIH HHS R01 CA144034NCI NIH HHS UM1 CA182876NHMRC/A*STAR joint call APP1056689/12/1/21/24/6689NIH grant HL153162the National Medical Research Council, Singapore CSA-SI (MOH-000434)the USA National Institute of Health U19AI162583Wellcome 206724/Z/17/ZWellcome research training fellowship 081814/Z/06/Z
6 · The paper itself

Abstract

backgroundTuberculosis (TB) continues to be a leading cause of morbidity and mortality worldwide. Although numerous genome-wide association studies (GWAS) have explored TB susceptibility across various ethnic groups, multi-population replication of findings has been very limited, particularly outside the HLA region, and a significant portion of TB heritability remains unexplained.

methodsWe conducted GWAS in the Singapore Chinese and Vietnamese, followed by a comprehensive meta-analysis incorporating 4 independent East Asian datasets (N = 11,841 cases; N = 197,373 controls). The transferability of any identified association was assessed using summary statistics from independent European populations. Potential candidate genes were prioritized using gene-based association testing and integrative bioinformatic database mining, followed by functional validation through assessment of Mycobacterium marinum (M.marinum) infection burden in CRISPR-Cas9-edited zebrafish embryos.

resultsWe identified a novel susceptibility locus for pulmonary TB (PTB) at 22q12.2 in East Asians [rs6006426, OR (95%Cl) = 1.097(1.066, 1.130), P

conclusionsOur findings offer novel insights into the genetic factors underlying TB and reveals new avenues for understanding its etiology.

Indexed as

East Asian PeopleEuropean PeopleGenetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyTuberculosisTuberculosis, PulmonaryAnimalsHumansMycobacterium marinumPolymorphism, Single NucleotideZebrafishGenome-wide association studyInfectious diseasesNon-HLA genetic locusPulmonary tuberculosisUnderrepresented populations

Identifiers

PMID42192477
PMCPMC13214086

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.