Evidence map›Paper›PMID 42190656›Full record

ArticleCell systems2026

Active RNA synthesis patterns nuclear condensates.

Andriy Goychuk, Salman F Banani, Pradeep Natarajan, Ming M Zheng, Haoran Wang, Giuseppe Dall'Agnese, Richard A Young, Mehran Kardar, Jonathan E Henninger, Arup K Chakraborty

Abstract read
In one paragraph

Article in Cell systems, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Active droplets controlled by enzymatic reactions.Journal of the Royal Society, Interface · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Andriy GoychukInstitute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Salman F BananiWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Pradeep NatarajanDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Ming M ZhengWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Haoran WangDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Giuseppe Dall'AgneseWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Richard A YoungWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address: young@wi.mit.edu.
Mehran KardarDepartment of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address: kardar@mit.edu.
Jonathan E HenningerDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA. Electronic address: jhenning@andrew.cmu.edu.
Arup K ChakrabortyInstitute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02139, USA; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address: arupc@mit.edu.

Funding

Targeting Genomic Instability and Evolution in MyelomaP01CA155258 · NCI · DANA-FARBER CANCER INST · PI Nikhil C. Munshi · 2011 to 2026
$32.5M
Transcriptional regulation in mammalian cellsR35GM144283 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI RICHARD YOUNG · 2022 to 2026
$4.0M
Oncopathology Training ProgramT32CA251062 · NCI · DANA-FARBER CANCER INST · PI JON C. ASTER, KATHLEEN H BURNS · 2020 to 2026
$2.4M
RNA-mediated Feedback Control of Oncogenic TranscriptionF32CA254216 · NCI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI HENNINGER, JONATHAN EDWARD · 2020 to 2022
$206k
NCI NIH HHS F32 CA254216NCI NIH HHS P01 CA155258NCI NIH HHS T32 CA251062NIGMS NIH HHS R35 GM144283
6 · The paper itself

Abstract

Biomolecular condensates are membraneless compartments that organize biochemical processes in cells. In contrast to well-understood mechanisms describing how condensates form and dissolve, the principles underlying condensate patterning-including their size, number, and spacing in the cell-remain largely unknown. We hypothesized that RNA, a key regulator of condensate formation and dissolution, influences condensate patterning. Using nucleolar fibrillar centers (FCs) as a model condensate, we found that inhibiting ribosomal RNA synthesis significantly alters the patterning of FCs. Physical theory and experimental observations support a model whereby active RNA synthesis generates a non-equilibrium state that arrests condensate coarsening and thus contributes to condensate patterning. Altering FC condensate patterning by expression of the FC component treacle ribosome biogenesis factor 1 (TCOF1) impairs ribosomal RNA processing, linking condensate patterning to biological function. These results reveal how non-equilibrium states driven by active chemical processes regulate condensate patterning, which is important for cellular biochemistry and function.

Indexed as

Biomolecular CondensatesCell NucleusRNARNA, RibosomalAnimalsCell NucleolusNuclear ProteinsPhase SeparationNuclear ProteinsRNARNA, Ribosomalbiomolecular condensatesnon-equilibrium regulationnucleoluspatterningphase separationtranscription

Identifiers

PMID42190656
PMCPMC13293446

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.