Evidence map›Paper›PMID 42185537›Full record

ArticleNature methods2026

Subcellular chemical mapping using correlated cryogenic electron and mass spectrometry imaging.

Hannah Ochner, Buse Isbilir, Sonja Blasche, David Scheidweiler, Yuexuan Zhang, Zhexin Wang, Tom Smith, Catarina Franco, Rob Bradley, Kiran R Patil and 1 more

Abstract read
In one paragraph

Article in Nature methods, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hannah OchnerStructural Studies Division, MRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0003-2750-2775
Buse IsbilirStructural Studies Division, MRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0001-8055-5994
Sonja BlascheMRC Toxicology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0001-9422-0474
David ScheidweilerMRC Toxicology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-9507-455X
Yuexuan ZhangStructural Studies Division, MRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0009-0003-8672-0745
Zhexin WangStructural Studies Division, MRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0002-4256-1143
Tom SmithCell Biology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.ORCID http://orcid.org/0000-0002-0697-8777
Catarina FrancoCell Biology Division, MRC Laboratory of Molecular Biology, Cambridge, UK.
Rob BradleyMRC Toxicology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0009-0001-7781-9503
Kiran R PatilMRC Toxicology Unit, University of Cambridge, Cambridge, UK.
Tanmay A M BharatStructural Studies Division, MRC Laboratory of Molecular Biology, Cambridge, UK. tbharat@mrclmb.ac.uk.ORCID http://orcid.org/0000-0002-0168-0277

Funding

European Molecular Biology Organization (EMBO) ALTF 1076-2023Lister Institute of Preventive Medicine Lister PrizeWellcome Trust (Wellcome) 225317/Z/22/Z and 223788/Z/21/Z
6 · The paper itself

Abstract

Electron cryomicroscopy (cryo-EM) allows high spatial resolution visualization of biological specimens; however, it is challenging to chemically identify densities observed in cryo-EM. To overcome this, we combined cryo-EM with chemical imaging using focused ion beam secondary ion mass spectrometry (FIB-SIMS) for integrated spatiochemical analysis of untagged specimens. We show that our correlative workflow permits subcellular localization of molecules inside bacterial cells and is compatible with cryogenic light microscopy and FIB-milled lamellae of eukaryotic specimens. To highlight biological insights enabled by the workflow, we studied the uptake of bisphenol-AF, a widespread chemical pollutant, by environmental bacteria, revealing the storage of these chemicals within cytosolic phase-separated aggregates in pollutant-exposed cells, where they cannot be removed by the bacterial efflux machinery despite its robust upregulation. Cryo-EM-FIB-SIMS therefore represents an effective approach to map elemental and molecular signatures in near-native biological samples.

Indexed as

Cryoelectron MicroscopySpectrometry, Mass, Secondary IonBenzhydryl CompoundsBisphenol A CompoundsEscherichia coliPhenolsBenzhydryl CompoundsBisphenol A CompoundsPhenols

Identifiers

PMID42185537
PMCPMC13259928

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.