Evidence map›Paper›PMID 42182587›Full record

ArticleDrug design, development and therapy2026

Characterization of the Second-Generation Covalent Fragment Library (CovLib Gen2): Thiol Reactivity Profiling and p53-Y220C Rescue.

Martin Schwer, Sven R Aldea, Marc U Engelhardt, Jason Stahlecker, Janosch Rheinganz, Aaron Langkamp, Frank M Boeckler

Abstract read
In one paragraph

Article in Drug design, development and therapy, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Martin SchwerDepartment of Pharmacy and Biochemistry, Laboratory for Molecular Design & Pharmaceutical Biophysics, Eberhard Karls Universität Tübingen, Institute of Pharmaceutical Sciences, Tübingen, 72076, Germany.ORCID 0009-0005-0202-5353
Sven R AldeaDepartment of Pharmacy and Biochemistry, Laboratory for Molecular Design & Pharmaceutical Biophysics, Eberhard Karls Universität Tübingen, Institute of Pharmaceutical Sciences, Tübingen, 72076, Germany.ORCID 0009-0007-1144-0860
Marc U EngelhardtDepartment of Pharmacy and Biochemistry, Laboratory for Molecular Design & Pharmaceutical Biophysics, Eberhard Karls Universität Tübingen, Institute of Pharmaceutical Sciences, Tübingen, 72076, Germany.ORCID 0009-0007-9152-8538
Jason StahleckerDepartment of Pharmacy and Biochemistry, Laboratory for Molecular Design & Pharmaceutical Biophysics, Eberhard Karls Universität Tübingen, Institute of Pharmaceutical Sciences, Tübingen, 72076, Germany.ORCID 0000-0002-0044-4037
Janosch RheinganzDepartment of Pharmacy and Biochemistry, Laboratory for Molecular Design & Pharmaceutical Biophysics, Eberhard Karls Universität Tübingen, Institute of Pharmaceutical Sciences, Tübingen, 72076, Germany.ORCID 0009-0006-2383-9935
Aaron LangkampDepartment of Pharmacy and Biochemistry, Laboratory for Molecular Design & Pharmaceutical Biophysics, Eberhard Karls Universität Tübingen, Institute of Pharmaceutical Sciences, Tübingen, 72076, Germany.ORCID 0009-0008-4173-770X
Frank M BoecklerDepartment of Pharmacy and Biochemistry, Laboratory for Molecular Design & Pharmaceutical Biophysics, Eberhard Karls Universität Tübingen, Institute of Pharmaceutical Sciences, Tübingen, 72076, Germany.ORCID 0000-0001-8738-6716

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: Covalent Fragment-Based Drug Discovery (FBDD) has emerged as a powerful strategy for unlocking challenging pharmacological targets and engaging shallow or "cryptic" binding pockets. In this study, we present the design and characterization of the Second Generation Covalent Fragment Library (CovLib Gen2), an expanded collection of 81 structurally diverse electrophiles tailored for Covalent Fragment-Based Drug Discovery (FBDD) using an electrophile-first approach. The library spans five distinct warhead classes, including epoxides, vinyl sulfones, acrylamides, α-cyanoacrylamides, and a core set of SɴAr-reactive heteroarenes. Methods: We comprehensively profiled the library for physicochemical properties and intrinsic thiol reactivity using high-throughput 5,5'-dithiobis-(2-nitrobenzoic acid) (DTNB) and high-performance liquid chromatography (HPLC)-based glutathione (GSH) reactivity assays. To demonstrate the library's utility, we performed differential scanning fluorimetry (DSF) screening against the oncogenic, thermally unstable p53-Y220C mutant and subsequent specificity testing with two control mutants. Results: The library exhibited a broad dynamic range of reactivities with a clear correlation between the assay methods. Additionally, we identified 12 fragments with desirable mild reactivity profiles (t Conclusion: Our findings validate CovLib Gen2 as a versatile tool for ligand discovery, including electrophilic fragments covering a broad range of reactivity, and provide tractable starting points for the pharmacological rescue of p53-Y220C.

Indexed as

Drug DiscoverySmall Molecule LibrariesSulfhydryl CompoundsTumor Suppressor Protein p53High-Throughput Screening AssaysHumansMolecular StructureStructure-Activity RelationshipSmall Molecule LibrariesSulfhydryl CompoundsTumor Suppressor Protein p5355’-dithiobis-(2-nitrobenzoic acid)covalent fragment-based drug discoverydifferential scanning fluorimetryglutathionetumor suppressor p53warheads

Identifiers

PMID42182587
PMCPMC13197676

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.