Evidence map›Paper›PMID 42182427›Full record

ArticlebioRxiv : the preprint server for biology2026

Stochastic colonization and host-to-host transmission shape gut bacterial variability.

Carol Lu, Stanimir Asenov Tashev, Pedro Pessoa, Rory Kruithoff, Douglas P Shepherd, Steve Presse

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Carol LuCenter for Biological Physics, Arizona State University, Tempe 85281, AZ, USA.ORCID 0009-0001-5725-7806
Stanimir Asenov TashevCenter for Biological Physics, Arizona State University, Tempe 85281, AZ, USA.ORCID 0000-0002-0119-4412
Pedro PessoaCenter for Biological Physics, Arizona State University, Tempe 85281, AZ, USA.ORCID 0000-0002-6258-5679
Rory KruithoffCenter for Biological Physics, Arizona State University, Tempe 85281, AZ, USA.ORCID 0000-0002-5131-1330
Douglas P ShepherdCenter for Biological Physics, Arizona State University, Tempe 85281, AZ, USA.ORCID 0000-0001-9087-0832
Steve PresseCenter for Biological Physics, Arizona State University, Tempe 85281, AZ, USA.ORCID 0000-0002-5408-0718

Funding

Toward high spatiotemporal resolution models of single molecules for in vivo applicationsR35GM148237 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI Steve Presse · 2023 to 2026
$1.7M
NIGMS NIH HHS R35 GM148237
6 · The paper itself

Abstract

Understanding the kinetic processes that govern bacterial population dynamics within hosts is critical in developing effective strategies to control microbiota. However, inferring population dynamics is challenging due to large host-to-host bacterial population variability stemming from stochastic colonization events, as well as the inability to continuously monitor the bacterial population without disturbing the host. Using

Indexed as

host-microbe interactionsmicrobial ecologypopulation kineticspredator-prey dynamicssimulation-based inference

Identifiers

PMID42182427
PMCPMC13192810

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.