Evidence map›Paper›PMID 42182353›Full record

ArticlebioRxiv : the preprint server for biology2026

Circadian Clock Programming of Anticipatory Antiviral Immunity Gates Enteric Virus Infection Susceptibility.

Temitope O Oshinowo, Robert W Maples, Mikal A Woods Acevedo, Broc T McCune, Hunter Dalton, Ishea Johnson, Devin A Simpkins, Urbashi Basu, Chaitanya Dende, Vera L Tarakanova and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Temitope O OshinowoDepartment of Molecular Biology, Princeton University; Princeton NJ, 08540, USA.
Robert W MaplesDepartment of Microbiology, University of Texas Southwestern Medical Center; Dallas TX, 75390, USA.
Mikal A Woods AcevedoDepartment of Microbiology, University of Texas Southwestern Medical Center; Dallas TX, 75390, USA.
Broc T McCuneDepartment of Microbiology, University of Texas Southwestern Medical Center; Dallas TX, 75390, USA.
Hunter DaltonDepartment of Molecular Biology, Princeton University; Princeton NJ, 08540, USA.
Ishea JohnsonDepartment of Molecular Biology, Princeton University; Princeton NJ, 08540, USA.
Devin A SimpkinsDepartment of Molecular Biology, Princeton University; Princeton NJ, 08540, USA.
Urbashi BasuDepartment of Molecular Biology, Princeton University; Princeton NJ, 08540, USA.
Chaitanya DendeDepartment of Immunology, University of Texas Southwestern Medical Center; Dallas TX, 75390, USA.
Vera L TarakanovaDepartment of Microbiology and Immunology and Cancer Center, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Julie K PfeifferDepartment of Microbiology, University of Texas Southwestern Medical Center; Dallas TX, 75390, USA.
John F BrooksDepartment of Molecular Biology, Princeton University; Princeton NJ, 08540, USA.

Funding

INTEGRATIVE IMMUNOLOGY TRAINING PROGRAMT32AI005284 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Nan Yan · 2003 to 2026
$7.4M
MOLECULAR MICROBIOLOGY TRAINING GRANTT32AI007520 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Julie K Pfeiffer · 1997 to 2026
$7.0M
The influence of host barriers on viral quasispecies diversity and pathogenesisR01AI074668 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI PFEIFFER, JULIE K · 2008 to 2022
$6.0M
Circadian control of enteric virus infectionR01AI158351 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI PFEIFFER, JULIE K · 2021 to 2025
$2.9M
NIAID NIH HHS R01 AI074668NIAID NIH HHS R01 AI158351NIAID NIH HHS T32 AI005284NIAID NIH HHS T32 AI007520
6 · The paper itself

Abstract

Susceptibility to viral infection varies widely but is not fully explained by genetics, immune status, or exposure level. We show that time of day strongly influences infection outcome, with up to 100-fold differences in enteric viral burden depending on infection timing. This temporal gating is abolished in mice lacking a functional circadian clock. We identify the antiviral transcription factor IRF1 as a direct target of the circadian transcription factor BMAL1, resulting in rhythmic expression of a basal antiviral gene program prior to infection. Loss of IRF1 eliminates this program and abrogates time-of-day-dependent differences in viral replication. This circuit operates within intestinal myeloid cells, establishing a preexisting antiviral state. These findings indicate that the circadian clock programs host susceptibility in the intestine, before infection occurs.

Identifiers

PMID42182353
PMCPMC13192825

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.