Evidence map›Paper›PMID 42182225›Full record

ArticlebioRxiv : the preprint server for biology2026

MurineCyto-Det: A High-Resolution Murine BALF Cytology Dataset for Leukocyte Segmentation and Detection.

Thang X Le, Lan-Anh T Tran, Dia A Farabi, Shiyuan Wang, Anh T Q Phan, Stephania A Cormier, Anvi Taada, Derek McGrew, Yuxuan Du, Luan D Vu

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Thang X LeDepartment of Civil Engineering, University of Minho, Guimarães, 4800-058, Portugal.
Lan-Anh T TranDepartment of Mathematics, Computer Science and Statistics, Ghent University, Gent, 9000, Belgium.
Dia A FarabiDepartment of Electrical Engineering, The University of Texas at San Antonio, San Antonio, Texas, 78249, USA.
Shiyuan WangDepartment of Electrical Engineering, The University of Texas at San Antonio, San Antonio, Texas, 78249, USA.
Anh T Q PhanPennington Biomedical Research Center, Louisiana State University, Louisiana, 610101, USA.
Stephania A CormierPennington Biomedical Research Center, Louisiana State University, Louisiana, 610101, USA.
Anvi TaadaDepartment of Molecular and Microbiology Immunology, The University of Texas at San Antonio, Texas, 78249, USA.
Derek McGrewDepartment of Molecular and Microbiology Immunology, The University of Texas at San Antonio, Texas, 78249, USA.
Yuxuan DuDepartment of Electrical Engineering, The University of Texas at San Antonio, San Antonio, Texas, 78249, USA.ORCID 0000-0002-0568-3838
Luan D VuDepartment of Molecular and Microbiology Immunology, The University of Texas at San Antonio, Texas, 78249, USA.

Funding

The Role of IL4R Alpha in Neonatal RSV ImmunopathologyR01AI090059 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI CORMIER, STEPHANIA A · 2011 to 2025
$6.7M
NIAID NIH HHS R01 AI090059
6 · The paper itself

Abstract

Automated analysis of murine bronchoalveolar lavage fluid (BALF) cytology is important for preclinical respiratory research, yet progress has been limited by the lack of publicly available, well-annotated mouse BALF image datasets. We present MurineCyto-Det, a high-resolution murine BALF cytology dataset comprising 333 image tiles of size 1024 × 1024 pixels, annotated across five cytological categories with both pixel-level segmentation masks and one-to-one matched bounding boxes. The dataset contains 14,551 annotated cell instances and supports two complementary analysis tasks: morphology-oriented cell segmentation and object-level cell detection. To establish reproducible benchmark baselines, we evaluated representative segmentation and detection models. The results demonstrate the practical utility of MurineCyto-Det while highlighting realistic challenges arising from class imbalance, small object size, irregular cell morphology, and ambiguous debris-like structures. MurineCyto-Det provides a standardized resource for developing, evaluating, and comparing automated methods for murine BALF cytology analysis. The dataset is publicly available at https://doi.org/10.5281/zenodo.17608677.

Identifiers

PMID42182225
PMCPMC13192901

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.