Evidence map›Paper›PMID 42182220›Full record

ArticlebioRxiv : the preprint server for biology2026

Integrated Collagen Architecture and Composition Improve Risk Stratification in Triple-Negative Breast Cancer.

Resul Ozbilgic, Berfin Dinc, Kavya Vipparthi, Darcie D Seachrist, Marlo Nicolas, Ruth A Keri, Xuefeng Liu, Murat Yildirim, Mihriban Karaayvaz

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Resul OzbilgicDepartment of Cancer Sciences, Cleveland Clinic, Cleveland, OH, USA.ORCID 0000-0002-5275-5355
Berfin DincDepartment of Neurosciences, Cleveland Clinic, Cleveland, OH, USA.
Kavya VipparthiDepartment of Cancer Sciences, Cleveland Clinic, Cleveland, OH, USA.ORCID 0000-0002-5656-3166
Darcie D SeachristDepartment of Cancer Sciences, Cleveland Clinic, Cleveland, OH, USA.ORCID 0009-0004-7391-3270
Marlo NicolasDepartment of Pathology, Cleveland Clinic, Cleveland, OH, USA.
Ruth A KeriDepartment of Cancer Sciences, Cleveland Clinic, Cleveland, OH, USA.ORCID 0000-0002-1640-3088
Xuefeng LiuDepartment of Quantitative Health Sciences, Cleveland Clinic, Cleveland, OH, USA.
Murat YildirimDepartment of Neurosciences, Cleveland Clinic, Cleveland, OH, USA.ORCID 0000-0003-0853-2557
Mihriban KaraayvazDepartment of Cancer Sciences, Cleveland Clinic, Cleveland, OH, USA.ORCID 0000-0002-6264-2477

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI Drew James Adams · 1987 to 2026
$142.3M
Supplement - Discovering the role of YES1 in triple negative breast cancerR01CA257502 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI KERI, RUTH A. · 2021 to 2025
$2.8M
Developing next generation multiphoton systems to reveal cortico-thalamic interactions underlying short-term memory in behaving miceR00EB027706 · NIBIB · CLEVELAND CLINIC LERNER COM-CWRU · PI YILDIRIM, MURAT · 2022 to 2024
$747k
NCI NIH HHS P30 CA043703NCI NIH HHS R01 CA257502NIBIB NIH HHS R00 EB027706
6 · The paper itself

Abstract

Purpose: Triple-negative breast cancer (TNBC) exhibits substantial clinical heterogeneity, with some patients experiencing early recurrence and poor survival despite similar clinicopathologic features. We sought to determine whether quantitative measures of intratumoral collagen architecture and composition derived from standard histopathologic specimens can identify patients at risk of recurrence and adverse survival outcomes. Experimental Design: We analyzed a retrospective cohort of 79 TNBC tumors assembled into a tissue microarray using a multimodal computational pathology framework integrating Masson's Trichrome staining with COL1 and COL3 immunohistochemistry. Collagen architecture was quantified using fiber-based image analysis and unsupervised clustering, while collagen composition was assessed using a normalized COL3:COL1 ratio. Associations with recurrence-free interval (RFI) and overall survival (OS) were evaluated using Kaplan-Meier analysis, restricted mean survival time (RMST), and Cox proportional hazards modeling. Results: Unsupervised analysis identified four distinct collagen architectural states, which were consolidated into low-risk and high-risk groups based on recurrence patterns. High-risk collagen architecture was associated with significantly worse long-term RFI (log-rank p=0.025; RMST difference 10.1 months). Independently, a higher COL3:COL1 ratio was associated with improved OS (log-rank p=0.042; RMST difference 9.4 months). Integration of architectural and compositional biomarkers further refined risk stratification, identifying a subgroup with high-risk architecture and low COL3:COL1 ratio that exhibited the poorest survival outcomes. Notably, collagen-based stratification identified patients with divergent outcomes not readily predicted from tumor stage alone. Conclusions: Quantitative assessment of intratumoral collagen architecture and composition provides clinically meaningful prognostic information in TNBC and enables stratification of recurrence and survival risk. These findings support extracellular matrix phenotyping as a practical and scalable computational pathology approach for refining risk assessment in TNBC.

Identifiers

PMID42182220
PMCPMC13192946

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.