Evidence map›Paper›PMID 42173869›Full record

ArticleNature communications2026

Recognition and silencing of a new transposable element.

Luca Salvi, Yinxia Yan, Mario Halic

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Luca Salvi *Department of Biochemistry, Gene Center, Ludwig-Maximilians-Universität München (LMU), Munich, Germany.ORCID http://orcid.org/0009-0007-5484-1816
Yinxia Yan *Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0009-0007-2436-7260
Mario HalicDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA. mario.halic@stjude.org.ORCID http://orcid.org/0000-0002-0061-7372

Funding

Chromatin of repetitive elementsR01GM141694 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI HALIC, MARIO · 2021 to 2024
$1.4M
Structural and Functional Studies of ChromatinR35GM158165 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Mario Halic · 2025 to 2026
$1.3M
EC | EC Seventh Framework Programm | FP7 Ideas: European Research Council (FP7-IDEAS-ERC - Specific Programme: "Ideas" Implementing the Seventh Framework Programme of the European Community for Research, Technological Development and Demonstration Activities (2007 to 2013)) ERC-smallRNAhet-309584NIGMS NIH HHS R01 GM141694NIGMS NIH HHS R35 GM158165U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 1R01GM141694U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM158165
6 · The paper itself

Abstract

Genomes constantly face threats from transposable elements (TEs) and other genomic parasites. While the silencing of existing TE has been well studied, little is known about how cells recognize new invading TEs that they have not previously encountered. Here we explore this question by inserting foreign sequences into S. pombe. Our data revealed that the newly invading TE tj1 is recognized and targeted for silencing by RNAi and heterochromatin. The efficiency of recognition, as well as the degree and stability of silencing, depends on the copy number and insertion location of the TE. We demonstrated that RNA, rather than DNA, is sensed, and that the efficiency of TE recognition correlates with levels of RNA antisense to the TE, generated from upstream transcripts. We also show that various genes of non-transposable nature can initiate silencing. Our data show that silencing may not require recognition of specific elements in the transposon by the host defense systems, and suggest that disruption of host transcription patterns triggers recognition of TE.

Indexed as

DNA Transposable ElementsGene SilencingSchizosaccharomycesHeterochromatinRNA, AntisenseRNA InterferenceDNA Transposable ElementsHeterochromatinRNA, Antisense

Identifiers

PMID42173869
PMCPMC13402810

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.