Evidence map›Paper›PMID 42168209›Full record

ArticleNature communications2026

Real-time volumetric imaging of cells and molecules in deep tissues with Takoyaki ultrasound.

Sunho Lee, Di Wu, Dina Malounda, Claire Rabut, Mikhail G Shapiro

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. High-Volume Acquisition Rate Nonlinear Imaging Enables Robust 3-D Ultrasound Localization Microscopy.IEEE transactions on ultrasonics, ferroelectrics, and frequency control · 2025
    Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Sunho LeeAndrew and Peggy Cherng Department of Medical Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0009-0008-9871-7929
Di WuDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0002-6848-668X
Dina MaloundaDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0001-7086-9877
Claire RabutDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA. crabut@caltech.edu.
Mikhail G ShapiroAndrew and Peggy Cherng Department of Medical Engineering, California Institute of Technology, Pasadena, CA, USA. mikhail@caltech.edu.ORCID http://orcid.org/0000-0002-0291-4215

Funding

Biogenic Gas Nanostructures As Molecular Imaging Reporters For UltrasoundR01EB018975 · NIBIB · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI Mikhail Shapiro · 2014 to 2026
$5.9M
Ultrasonic Genetically Encoded Calcium Indicators for Whole-Brain NeuroimagingR01NS120828 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI SHAPIRO, MIKHAIL · 2021 to 2021
$2.1M
NIBIB NIH HHS R01 EB018975NINDS NIH HHS R01 NS120828U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01EB018975U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01NS120828
6 · The paper itself

Abstract

Acoustic contrast agents and reporter genes play a critical role in allowing ultrasound to visualize blood flow, map molecules and track cellular function in optically opaque living organisms. However, many advanced agents requiring high acoustic pressures have been imaged primarily in 2D, while biological phenomena of interest unfurl in three dimensions. Here, we introduce a method for efficient, dynamic imaging of contrast agents and reporter genes in 3D using multiplexed matrix array transducers. Our "Takoyaki" pulse sequence uses the simultaneous scanning of multiple focal points to excite contrast agents with sufficient acoustic pressure for nonlinear imaging while efficiently covering 3D space. We first characterize and benchmark Takoyaki imaging performance with gas vesicle contrast agents in vitro. Then we establish utility in cellular imaging by visualizing acoustic reporter gene expression in a mouse model of glioblastoma. Finally, we demonstrate real-time volumetric imaging by tracking the dynamics of fluid motion in mouse brain ventricles during and after intraventricular contrast injection. Takoyaki imaging enables a more comprehensive understanding of biological processes by providing spatiotemporal information in 3D within the constraints of accessible multiplexed matrix-array systems.

Indexed as

GlioblastomaImaging, Three-DimensionalAnimalsBrainBrain NeoplasmsCell Line, TumorContrast MediaGenes, ReporterHumansMiceMicrobubblesUltrasonographyContrast Media

Identifiers

PMID42168209
PMCPMC13402839

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.