Evidence map›Paper›PMID 42165139›Full record

ArticleNucleic acids research2026

Combinatorial histone modifications direct ATP-dependent chromatin remodeling by NURF to promoter-proximal nucleosomes.

So Yeon Kwon, Boyun Jang, Valentina Grisan, Yutong Liang, Michelle A C Reed, Hyeim Jung, Ye Eun Lee, Robyn Halston, Ka Hei Chan, Giovanni Bottegoni and 3 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

So Yeon KwonDepartment of Cancer and Genomic Sciences, School of Medical Sciences, College of Medicine and Health, University of Birmingham, Edgbaston B15 2TT, United Kingdom.
Boyun JangDepartment of Cancer and Genomic Sciences, School of Medical Sciences, College of Medicine and Health, University of Birmingham, Edgbaston B15 2TT, United Kingdom.
Valentina GrisanDepartment of Cancer and Genomic Sciences, School of Medical Sciences, College of Medicine and Health, University of Birmingham, Edgbaston B15 2TT, United Kingdom.
Yutong LiangDepartment of Cancer and Genomic Sciences, School of Medical Sciences, College of Medicine and Health, University of Birmingham, Edgbaston B15 2TT, United Kingdom.
Michelle A C ReedDepartment of Cancer and Genomic Sciences, School of Medical Sciences, College of Medicine and Health, University of Birmingham, Edgbaston B15 2TT, United Kingdom.
Hyeim JungDepartment of Cancer and Genomic Sciences, School of Medical Sciences, College of Medicine and Health, University of Birmingham, Edgbaston B15 2TT, United Kingdom.
Ye Eun LeeDepartment of Cancer and Genomic Sciences, School of Medical Sciences, College of Medicine and Health, University of Birmingham, Edgbaston B15 2TT, United Kingdom.
Robyn HalstonDepartment of Cancer and Genomic Sciences, School of Medical Sciences, College of Medicine and Health, University of Birmingham, Edgbaston B15 2TT, United Kingdom.ORCID 0000-0003-4794-5418
Ka Hei ChanDepartment of Cancer and Genomic Sciences, School of Medical Sciences, College of Medicine and Health, University of Birmingham, Edgbaston B15 2TT, United Kingdom.
Giovanni BottegoniDepartment of Biomolecular Sciences, Università degli Studi di Urbino Carlo Bo, Via Aurelio Saffi 2, 61029 Urbino PU, Italy.
Ulrich L GuntherHenry Wellcome Building for Biomolecular NMR Spectroscopy, School of Cancer Sciences, University of Birmingham, Edgbaston B15 2TT, United Kingdom.
Carl WuDepartment of Biology, Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, United States.
Paul BadenhorstDepartment of Cancer and Genomic Sciences, School of Medical Sciences, College of Medicine and Health, University of Birmingham, Edgbaston B15 2TT, United Kingdom.ORCID 0000-0002-2542-0250

Funding

Biotechnology and Biological Sciences Research Council BB/L00996X/1Biotechnology and Biological Sciences Research Council BB/M028054/1Cancer Research UK C11871/A10462Cancer Research UK C11871/A9289Leverhulme Trust RPG 2020-099University of Birmingham
6 · The paper itself

Abstract

The nucleosome remodeling factor (NURF) is a conserved imitation switch-containing ATP-dependent chromatin remodeling complex that slides nucleosomes to control transcription and genome organization. Recognition of histone modifications (HPTMs) by reader domains has been proposed to focus remodeler action at discrete genome targets, either by controlling recruitment or through local allosteric regulation of core enzymatic activities. To distinguish mechanisms by which HPTMs influence NURF, we defined the HPTM-binding specificity of NURF by screening novel combinations of histone-reader interactions. We observe the NURF-selective subunit (BPTF/NURF301) recognizes multiple H3 and H4 tail modifications via C-terminal PHD2 and bromodomains. Modified H3 recognition requires a new binding-pocket on PHD2 for H3K9AcS10p that cooperates with the known H3K4me3-binding hydrophobic cage to enable high-affinity binding to triply modified H3K4me3K9AcS10p. This combinatorial HPTM recognition discriminates and stabilizes NURF recruitment to +1 nucleosomes of active genes, maintaining nucleosome position to control transcription. Our data establish direct, causal links between HPTM recognition, remodeler recruitment, and consequent activity.

Indexed as

ChromatinChromatin Assembly and DisassemblyHistone CodeHistonesNucleosomesAdenosine TriphosphateAnimalsAntigens, NuclearBromodomain Containing ProteinsCell LineChromosomal Proteins, Non-HistoneDrosophilaDrosophila ProteinsEscherichia coliFemaleHumansAdenosine TriphosphateAntigens, NuclearBromodomain Containing ProteinsChromatinChromosomal Proteins, Non-HistoneDrosophila ProteinsE(bx) protein, Drosophilafetal Alzheimer antigenHistonesNerve Tissue ProteinsNucleosomesTranscription Factors

Identifiers

PMID42165139
PMCPMC13191287

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.