Evidence map›Paper›PMID 42164865›Full record

ArticleiScience2026

Application of spatial transcriptomics across organoids for a high-resolution, spatial whole-transcriptome benchmarking dataset.

Maria Rosaria Nucera, Natalie Charitakis, Ryan F Leung, Anna Leichter, Natasha K Tuano, Marzena Walkiewicz, Vallari Sawant, Lynn Rowley, Michelle Scurr, Pei X Er and 28 more

Abstract read
In one paragraph

Article in iScience, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Maria Rosaria NuceraStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Natalie CharitakisStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Ryan F LeungStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Anna LeichterStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Natasha K TuanoStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Marzena WalkiewiczStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Vallari SawantStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Lynn RowleyStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Michelle ScurrStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Pei X ErStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Ker S TanStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Rebecca SuttonStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Feroz AhmadStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Ritika SaxenaStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Alexander MaytumStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Declan L TurnerStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Holly K VogesStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Hieu T NimStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Kira X SunBGI Australia, Brisbane, QLD, Australia.
Bicheng YangBGI Australia, Brisbane, QLD, Australia.
Nick L LiBGI Australia, Brisbane, QLD, Australia.
Gareth BallDepartment of Paediatrics, University of Melbourne, Parkville, VIC, Australia.
Andrew G ElefantyStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Shireen R LamandéStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Kynan T LawlorStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Jessica M VanslambrouckStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Richard J MillsStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Elizabeth S NgStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Edouard G StanleyStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Rhiannon B WerderStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Melissa H LittleStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
David A ElliottStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Enzo R PorrelloStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Maree C FauxStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
David D EisenstatStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Silvia VelascoStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Fernando J RosselloStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.
Mirana RamialisonStem Cell Medicine Theme, Murdoch Children's Research Institute, Parkville, VIC, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stem cell-derived organoids hold promise to model tissue-specific diseases. To enable this, it is crucial to assess how transcriptional signatures, cellular organization, and composition of organoids compare to

Indexed as

bioinformaticshealth sciencesmedicine

Identifiers

PMID42164865
PMCPMC13186086

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.