Evidence map›Paper›PMID 42163114›Full record

ArticleBMC plant biology2026

Diversification of plant specific organellar single-stranded DNA binding genes and their roles in mitochondrial genome rearrangements in Arabidopsis and rice.

Yingke Hou, Xiaolin Gu, Liyun Nie, Jie Wang, Zhiqiang Wu, Yi Zou

Abstract read
In one paragraph

Article in BMC plant biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Yingke Hou *Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
Xiaolin Gu *Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
Liyun Nie *Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
Jie WangShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
Zhiqiang WuShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China. wuzhiqiang@caas.cn.
Yi ZouShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China. zouyi@caas.cn.

Funding

Basic and Applied Basic Research Foundation of Guangdong Province 2023A1515111029the Chinese Academy of Agricultural Sciences Elite Youth Program grant 110243160001007the Guangdong Pearl River Talent Program 2021QN02N792the National Natural Science Foundation of China 32170238, 32400191the Science, Technology and Innovation Commission of Shenzhen Municipality RCYX20200714114538196
6 · The paper itself

Abstract

backgroundOrganelle genome stability is essential for plant development and adaptation. Recombination of repetitive sequences in plant mitochondrial genomes is a key factor influencing this stability and is tightly regulated by nuclear-encoded proteins, including plant-specific organellar single-stranded DNA-binding (OSB) proteins. However, the evolutionary history and overall impact of OSB genes on organellar genome stability remain poorly understood.

resultsHere, we identified 182 OSB genes from 59 species across major plant clades. Seed plant OSB genes formed three phylogenetic groups with varying numbers of conserved PDF domains, while chlorophytes, streptophytes, bryophytes, lycophytes, ferns lay outside these groups with lower copies. Using high-fidelity (HiFi) long-read sequencing, we examined the effects of OSB deficiency on organellar genome stability in both eudicots (Arabidopsis) and monocots (rice). In Arabidopsis osb1 and osb4, and rice osb1 mutants, recombination increased at a subset of nearly identical mitochondrial medium-sized repeats but decreased at repeats longer than 1 kb. These repeats displayed asymmetric accumulation of conformations, and a shift in the dominant genome conformation was also observed in some individuals. Moreover, different regions of the mutant mitochondrial genomes showed uneven HiFi read coverage.

conclusionsOur findings highlight important roles of OSB genes in regulating the stability of plant mitochondrial genomes.

Indexed as

ArabidopsisDNA-Binding ProteinsDNA, Single-StrandedGenes, PlantGenome, MitochondrialOryzaPlant ProteinsEvolution, MolecularGene RearrangementGenome, PlantGenomic InstabilityPhylogenyDNA-Binding ProteinsDNA, Single-StrandedPlant ProteinsGenome stabilityMitochondrial genomesOrganellar single-stranded DNA-binding (OSB) proteinsPlant organellar genomeRecombinationStructural variation

Identifiers

PMID42163114
PMCPMC13393729

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.