Evidence map›Paper›PMID 42162495›Full record

ArticleJournal of computer-aided molecular design2026

Python-based high-throughput extraction of void information, solvent accessible volume and adsorbate molecules from MOF for adsorption-separation applications.

Mengxuan Zhang, Yujing Guo, Shichen Liu, Huawei Zhou

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Article in Journal of computer-aided molecular design, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 authors.

Mengxuan ZhangSchool of Chemistry and Chemical Engineering, Liaocheng University, No. 1, Hunan Road, Dongchangfu District, Liaocheng City, 252000, Shandong, China.
Yujing GuoSchool of Chemistry and Chemical Engineering, Liaocheng University, No. 1, Hunan Road, Dongchangfu District, Liaocheng City, 252000, Shandong, China.
Shichen LiuSchool of Chemistry and Chemical Engineering, Liaocheng University, No. 1, Hunan Road, Dongchangfu District, Liaocheng City, 252000, Shandong, China.
Huawei ZhouSchool of Chemistry and Chemical Engineering, Liaocheng University, No. 1, Hunan Road, Dongchangfu District, Liaocheng City, 252000, Shandong, China. zhouhuawei@lcu.edu.cn.ORCID 0000-0002-9428-5400

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6 · The paper itself

Abstract

With the rapid growth of chemical data and information, there is an increasing need for analyzing large chemical datasets and extracting key or feature information. Currently, more than 100,000 types of metal-organic frameworks (MOFs), as the material recently awarded the Nobel Prize in Chemistry, have been experimentally synthesized. The performance of MOFs in adsorption-separation applications depends on their specific void characteristics, including void count, spatial distribution, and volume size. This study presents the entire process including data collection, recognition of key or feature information, the workflow of using Python tools, and the automatic output of results for void information, solvent accessible volume (SAV) and adsorbate molecules. By processing 219 CIF files collected from open-access publications, CCDC, and supporting information files, we successfully extracted 498 total blocks, including 259 blocks with void information, 157 blocks with SAV data, 286 blocks with squeeze details, and 1573 individual voids. In addition, we identified adsorbate molecules (diethyl ether, chloroform, water, ethanol, toluene, carbon dioxide) in MOFs. The method demonstrates computational efficiency, requiring only standard CPU resources to process large datasets.

Indexed as

SoftwareSolventsAdsorptionCarbon DioxideCarbon DioxideSolventsAdsorbate MoleculesHigh-throughput analysisLarge data processingMetal-organic frameworksPython programmingSolvent accessible volumeVoid information extraction

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