Evidence map›Paper›PMID 42160262›Full record

ArticlePlant physiology2026

Citric acid alters Arabidopsis root morphology and development through ROS-dependent and ROS-independent mechanisms.

Tao Zhang, Jesus T Peng, Jie Chu, Shihong Luo, Jihyeon Lee, Diana Belén Sánchez Rodríguez, Katreena Gundran, Xuan Xia, Adriana Garay-Arroyo, Jocelyn A Richardson and 1 more

Abstract read
In one paragraph

Article in Plant physiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Tao ZhangDepartment of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, United States.
Jesus T PengDepartment of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, United States.
Jie ChuDepartment of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, United States.
Shihong LuoDepartment of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, United States.
Jihyeon LeeDepartment of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, United States.
Diana Belén Sánchez RodríguezLaboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Depto. de Ecología Funcional, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, 04510, México.
Katreena GundranDepartment of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, United States.
Xuan XiaJiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Key Laboratory of Plant Functional Genomics of the Ministry of Education, Agricultural College of Yangzhou University, Yangzhou, 225009, China.
Adriana Garay-ArroyoLaboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Depto. de Ecología Funcional, Instituto de Ecología, Universidad Nacional Autónoma de México, Ciudad de México, 04510, México.ORCID 0000-0003-1575-6284
Jocelyn A RichardsonStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA 94025, United States.
Alexandra J DickinsonDepartment of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, United States.ORCID 0000-0002-7840-5636

Funding

A Synchrotron Radiation Structural Biology ResourcesP30GM133894 · NIGMS · STANFORD UNIVERSITY · PI Ritimukta Sarangi · 2020 to 2026
$43.3M
Illuminating the chemical biology of stem cell decisions in plant rootsR35GM147216 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Alexandra Jazz Dickinson · 2022 to 2026
$2.0M
Hellman Scholars FoundationMoore Foundation InventorNational Institute of Health 1R35GM147216National Science Foundation EAGER 2028649NIGMS NIH HHS P30GM133894NIGMS NIH HHS R35 GM147216NIH HHSSLAC National Accelerator LaboratoryUC San Diego IGM Genomics Center #S10 OD026929US Department of Energy DE-AC02-76SF00515
6 · The paper itself

Abstract

Citric acid is an integral component of primary metabolism and cellular energetics and plays extensive roles in other cellular processes, such as signaling, chelating, and exudation. Here, we characterized the unique effects that citric acid has on Arabidopsis (Arabidopsis thaliana) root structure and development. In particular, we investigated how citric acid modifies 2 root types in opposing ways: by inhibiting primary root growth while promoting anchor root growth. To understand the mechanisms driving these different growth patterns within the same organism, we analyzed nutrient and transcriptomic responses to citric acid treatment in anchor roots and primary roots. High-spatial resolution elemental analysis revealed that root meristems and the root-hypocotyl junction are regions of strong nutrient enrichment, but that citric acid treatment has little effect on nutrient levels in these regions. Transcriptional analysis revealed major differences between primary roots and anchor roots in response to citric acid. In particular, citric acid acted as a reactive oxygen species (ROS) scavenger through increased Class III peroxidase transcription, effectively reducing H2O2 levels both in vitro and in vivo. Altering the ROS balance at the root-hypocotyl junction was sufficient to induce anchor root formation. Citric acid treatment also differentially upregulated lignin biosynthesis, lignin assembly, and ETHYLENE RESPONSE FACTOR 115 expression in primary roots and anchor roots. ETHYLENE RESPONSE FACTOR 115 regulates the quiescent center and root columella, and we found that citric acid treatment induces developmental defects in this tissue. Overall, this study reveals that a vital organic acid produced and secreted at relatively high concentrations has both widespread and specific effects on plant development and root architecture.

Indexed as

ArabidopsisCitric AcidPlant RootsReactive Oxygen SpeciesArabidopsis ProteinsGene Expression Regulation, PlantHydrogen PeroxideLigninArabidopsis ProteinsCitric AcidHydrogen PeroxideLigninReactive Oxygen Species

Identifiers

PMID42160262
PMCPMC13188997

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.