Evidence map›Paper›PMID 42157162›Full record

ArticleBMC biology2026

Elevated retrocopy burden and sloth-specific expansions illuminate mammalian genome evolution.

Marcela Uliano-Silva, Helena Beatriz da Conceição, Rafael L V Mercuri, Sylke Winkler, Gabriela D A Guardia, Eugene Myers, Shane McCarthy, Alan Tracey, Alexander Suh, Mark Blaxter and 2 more

Abstract read
In one paragraph

Article in BMC biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Marcela Uliano-Silva *Tree of Life, Wellcome Sanger Institute, Cambridge, UK. mu2@sanger.ac.uk.
Helena Beatriz da Conceição *Molecular Oncology Center, Hospital Sírio Libanês, São Paulo, Brazil.
Rafael L V MercuriMolecular Oncology Center, Hospital Sírio Libanês, São Paulo, Brazil.
Sylke WinklerMax-Planck Institute for Molecular Cell Biology & Genetics, Dresden, Germany.
Gabriela D A GuardiaMolecular Oncology Center, Hospital Sírio Libanês, São Paulo, Brazil.
Eugene MyersMax-Planck Institute for Molecular Cell Biology & Genetics, Dresden, Germany.
Shane McCarthyTree of Life, Wellcome Sanger Institute, Cambridge, UK.
Alan TraceyTree of Life, Wellcome Sanger Institute, Cambridge, UK.
Alexander SuhCentre for Molecular Biodiversity Research, Leibniz Institute for the Analysis of Biodiversity Change, Museum Koenig Bonn, Adenauerallee 160, Bonn, 53113, Germany.
Mark BlaxterTree of Life, Wellcome Sanger Institute, Cambridge, UK.
Pedro A F GalanteMolecular Oncology Center, Hospital Sírio Libanês, São Paulo, Brazil. pgalante@mochsl.org.br.
Camila J MazzoniDepartment of Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research (IZW), Berlin, Germany. mazzoni@izw-berlin.de.

Funding

Fundação de Amparo à Pesquisa do Estado de São Paulo 2018/15579-8Marie Skłodowska-Curie Individual Fellowship Marie Skłodowska-Curie grant agreement No. 750747Wellcome Wellcome Trust (Grant 220540/Z/20/A, Wellcome Sanger Institute Quinquennial Review 2021-2026)Wellcome Trust Wellcome Trust (Grant 220540/Z/20/A, Wellcome Sanger Institute Quinquennial Review 2021-2026)
6 · The paper itself

Abstract

backgroundXenarthrans, comprising sloths, anteaters, and armadillos, represent one of the most morphologically and physiologically specialized mammalian clades, yet the genomic basis of their adaptations remains poorly understood. Here, we present chromosome-level genomes for the two-toed sloth (Choloepus didactylus) and the southern anteater (Tamandua tetradactyla) and investigate how retrotransposon-mediated gene duplications (retrocopies) have shaped genome evolution in these and other species in Xenarthra.

resultsComparative analyses revealed that the xenarthran genomes analyzed here harbour the highest number of retrocopies reported among mammals, with lineage-specific insertion dynamics. Anteater and armadillo genomes contain older LINE1 repertoires and species-specific older retrocopy insertions. In contrast, sloths retain both an abundance of young LINE1s and thousands of young retrocopies, alongside a large shared set that originated from an evolutionary burst of retroduplication in the branch leading to their last common ancestor (~ 30 Mya). In C. didactylus, 49% of retrocopies were found to be expressed in five tissues, compared with 27% in Dasypus novemcinctus in three tissues. Evolutionary analyses identified 38 retrocopies with strong hallmarks of domestication in C. didactylus. Many of these retrocopies derive from parental genes involved in mitochondrial and metabolic processes, suggesting a potential genomic contribution to the physiological specializations of sloths.

conclusionsAltogether, our findings identify retrotransposition as a major contributor to the genomic architecture of the xenarthrans presented here and highlight retrocopy origination as a mechanism for generating lineage-specific novelty and, possibly, distinctive biological specializations.

Indexed as

Evolution, MolecularGene DuplicationGenomeRetroelementsSlothsAnimalsLong Interspersed Nucleotide ElementsPhylogenyRetroelementsComparative genomicsGenome evolutionLINE1 retrotransposonMammalsMetabolic adaptationRetrocopyRetrogene domesticationSlothsXenarthra

Identifiers

PMID42157162
PMCPMC13251070

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.