Evidence map›Paper›PMID 42156938›Full record

ArticleCommunications biology2026

Super Enhancer RNAs Rewrite the Molecular Script of Complex Gene Regulation in the MDD Brain.

Yogesh Dwivedi, Bhaskar Roy

Abstract read
In one paragraph

Article in Communications biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yogesh DwivediDepartment of Psychiatry and Behavioral Neurobiology, Heersink School of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA. ydwivedi@uab.edu.ORCID http://orcid.org/0000-0002-5359-4717
Bhaskar RoyDepartment of Psychiatry and Behavioral Neurobiology, Heersink School of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.

Funding

Novel cell type-specific epigenetic role of nuclear lncRNAs in 3D heterochromatization and transcriptional repatterning in the MDD brainR56MH138596 · NIMH · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DWIVEDI, YOGESH · 2025 to 2025
$730k
U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH) R56MH138596
6 · The paper itself

Abstract

Chromatin conformational changes are key to gene regulation in the brain and have recently been shown to be regulated by super-enhancer RNAs (seRNAs). We examine the role of seRNAs in major depressive disorder (MDD) by profiling the prefrontal cortex from 25 MDD subjects and 25 matched non-psychiatric controls. Our analysis reveals 175 differentially expressed seRNAs, of which 140 are upregulated and 35 are downregulated. Our proximity mapping (±50 kb) links 94 seRNAs to nearby protein-coding genes, while long-range analysis (±500 kb) uncovered 584 seRNA-mRNA interaction pairs, most within 400 kb of genomic range. These interactions formed cis-regulatory hubs and hotspots, with notable pairs involving CEBPA, NR3C1, and DUSP1. Additionally, several genes are found to be co-regulated by distinct seRNAs. Spatial mapping confirms that many altered seRNAs are located near super-enhancer regions. Our results for the first time highlight seRNAs as key modulators of proximal and distal gene networks in MDD, offering novel insights and therapeutic avenues.

Indexed as

BrainEnhancer RNAsGene Expression RegulationMajor Depressive DisorderSuper EnhancersFemaleGene Regulatory NetworksHumansMaleEnhancer RNAs

Identifiers

PMID42156938
PMCPMC13620132

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.