Evidence map›Paper›PMID 42156743›Full record

ArticleNature communications2026

Topological stress regulates replication fork dynamics in unperturbed S phase.

Deepika Jayaprakash, Josie Gannon Patterson, Ruthie Mulvaney, Quinn Dickinson, Courtney Lovejoy, Mads Lerdrup, Juan Carlos Rivera-Mulia, David Cortez, Rahul Bhowmick

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Deepika JayaprakashDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN, USA.
Josie Gannon PattersonDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN, USA.ORCID http://orcid.org/0009-0008-0280-8317
Ruthie MulvaneyDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN, USA.
Quinn DickinsonDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Medical School, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0002-7744-3083
Courtney LovejoyDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN, USA.ORCID http://orcid.org/0000-0001-9178-5226
Mads LerdrupDepartment of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-7730-8973
Juan Carlos Rivera-MuliaDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Medical School, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0002-7566-3875
David CortezDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN, USA.ORCID http://orcid.org/0000-0003-0154-140X
Rahul BhowmickDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN, USA. rahul.bhowmick@vanderbilt.edu.ORCID http://orcid.org/0000-0002-5412-1209

Funding

Analysis of the Replication Stress ResponseR01GM116616 · NIGMS · VANDERBILT UNIVERSITY · PI David K Cortez · 2015 to 2026
$5.4M
Characterizing the effect of transcription-replication conflicts on transcription and co-transcriptional processesR35GM155237 · NIGMS · VANDERBILT UNIVERSITY · PI Rahul Bhowmick · 2024 to 2026
$1.2M
NIGMS NIH HHS R01 GM116616NIGMS NIH HHS R35 GM155237U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM155237
6 · The paper itself

Abstract

Accurate genome duplication requires tight-regulation of replication fork progression, and disruptions to this process are a major source of genomic instability, yet how fork dynamics are controlled during unperturbed S-phase remains unclear. We found replication forks elongate slowly in early S (ES) and faster in late S, independent of transcription or nucleotide availability. Elevated origin firing coupled with low TOP2A in ES generates torsional stress, causing replisome uncoupling, reduced fork speed, and basal ATR-CHK1 activation. Overexpression of TOP2A enhances fork speed and reduces replication stress in ES. Thus, TOP2A is a limiting replication factor during unperturbed ES, and basal ATR-CHK1 signaling is driven by transient replisome uncoupling. Also, TOP2A overexpression suppresses oncogene-driven replication stress. Given that TOP2A is frequently upregulated in cancers, it may function as a compensatory response to oncogene-induced replication stress. Together, these findings establish TOP2A as a central regulator of replication fork dynamics.

Indexed as

DNA ReplicationDNA Topoisomerases, Type IIPoly-ADP-Ribose Binding ProteinsS PhaseAtaxia Telangiectasia Mutated ProteinsCheckpoint Kinase 1Genomic InstabilityHumansReplication OriginReplisomesSignal TransductionAtaxia Telangiectasia Mutated ProteinsATR protein, humanCheckpoint Kinase 1CHEK1 protein, humanDNA Topoisomerases, Type IIPoly-ADP-Ribose Binding ProteinsReplisomesTOP2A protein, human

Identifiers

PMID42156743
PMCPMC13381709

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.