Long-term changes in the Juvenile Sockeye Salmon Rearing Capacity of the Chignik Lakes Watershed.

Freshwater ecosystems respond rapidly to perturbations in climate, geomorphology, and population abundances. For migratory species in interconnected habitat networks, local habitat conditions can control the productivity of individual populations. Asynchronous variation in habitat quality can simultaneously stabilize ecological processes at broad scales but also complicate understanding of ecosystem dynamics. We investigated habitat-specific trends in indicators of the rearing capacity for juvenile sockeye salmon in a remote watershed in Alaska over the last ~60 years. The motivation of this effort was to understand if the collapse of the local salmon fishery in 2018 could be traced to changes in habitat quality within the nursery watershed. Our analyses describe high variability in the habitat conditions across both spatial and temporal scales, yet do not suggest a decline in the overall sockeye salmon rearing capacity of the watershed. We observed increasing maximum water temperatures in a shallow lake but more stable conditions in a deep lake, an improvement in zooplankton prey resources in the deep lake, and increased juvenile sockeye salmon growth rates throughout the watershed. Although we detected no long-term decline in rearing habitat quality, there was a decrease in juvenile sockeye salmon abundance from 2013-2016, suggesting high early life stage mortality prior to the period of juvenile rearing leading up to the fishery collapse.