Evidence map›Paper›PMID 42152682›Full record

ArticleNucleic acids research2026

Treacle-dependent TOPBP1 condensation regulates the nucleolar DNA damage response.

Nadezhda V Petrova, Dmitry A Deriglazov, Anastasia P Kovina, Artem V Luzhin, Victoria O Shender, Georgij P Arapidi, Alexey S Gavrikov, Alexander S Mishin, Sergey V Razin, Artem K Velichko

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nadezhda V PetrovaDepartment of Cellular Genomics, Institute of Gene Biology RAS, 119334 Moscow, Russia.
Dmitry A DeriglazovDepartment of Cellular Genomics, Institute of Gene Biology RAS, 119334 Moscow, Russia.
Anastasia P KovinaDepartment of Cellular Genomics, Institute of Gene Biology RAS, 119334 Moscow, Russia.
Artem V LuzhinDepartment of Cellular Genomics, Institute of Gene Biology RAS, 119334 Moscow, Russia.
Victoria O ShenderShemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia.
Georgij P ArapidiShemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia.
Alexey S GavrikovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia.
Alexander S MishinShemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia.
Sergey V RazinDepartment of Cellular Genomics, Institute of Gene Biology RAS, 119334 Moscow, Russia.ORCID 0000-0003-1976-8661
Artem K VelichkoDepartment of Cellular Genomics, Institute of Gene Biology RAS, 119334 Moscow, Russia.

Funding

Russian Science Foundation 21-64-00001-PRussian Science Foundation 21--64--00001--PRussian Science Foundation 25-74-00076
6 · The paper itself

Abstract

Ribosomal DNA (rDNA) arrays are among the most highly transcribed repetitive regions of the genome and therefore require specialized mechanisms to maintain their stability. The nucleolar DNA damage response (n-DDR) safeguards rDNA integrity and is coordinated by the repair scaffold TOPBP1 and the fibrillar center (FC) protein Treacle. Here, we show that Treacle promotes phase separation of TOPBP1 within the FC to establish a spatially confined signaling platform that amplifies nucleolar DDR signaling and coordinates rDNA repair pathway engagement. Using an inducible TOPBP1 oligomerization system together with physiological models of rDNA damage, we demonstrate that phosphorylation of Treacle by CK2 and ATR/ATM enables its interaction with TOPBP1 and nucleates TOPBP1 condensation in the nucleolus. Functionally, Treacle-dependent condensation promotes robust ATR/ATM activation, γH2AX signaling, and recruitment of DNA repair factors. Disruption of this process does not impair the initial removal of rDNA double-strand breaks but shifts repair toward rapid DNA-PK-dependent nonhomologous end joining while attenuating ATR/ATM signaling and reducing engagement of homologous recombination-associated pathways. Treacle-knockout cells exhibit accelerated early rDNA repair but incomplete damage resolution at later stages. Together, our findings identify Treacle-dependent TOPBP1 condensation as a nucleolar signaling platform that promotes accurate maintenance of highly repetitive rDNA arrays.

Indexed as

Carrier ProteinsCell NucleolusDNA-Binding ProteinsDNA DamageDNA RepairNuclear ProteinsPhosphoproteinsAtaxia Telangiectasia Mutated ProteinsBromodomain Containing ProteinsChromosomal Proteins, Non-HistoneDNA Breaks, Double-StrandedDNA, RibosomalHistonesHumansPhosphorylationSignal TransductionAtaxia Telangiectasia Mutated ProteinsATR protein, humanBAZ2A protein, humanBromodomain Containing ProteinsCarrier ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA, RibosomalHistonesNuclear ProteinsPhosphoproteinsTOPBP1 protein, human

Identifiers

PMID42152682
PMCPMC13183679

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.