Evidence map›Paper›PMID 42149652›Full record

ArticleMicrobial genomics2026

Comparative genomics reveals high prophage diversity and horizontal gene transfer of effectors and phage defence systems in the

Dominique Holtappels, George E J Rickus, Túlio Morgan, Rafael R de Rezende, Britt Koskella, Poliane Alfenas-Zerbini

Erratum issuedAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbial genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Dominique HoltappelsPlant Pathology and Plant-Microbe Biology section, School of Integrative Plant Science, Cornell University, Cornell AgriTech, Geneva, NY, USA.
George E J RickusDepartment of Integrative Biology, University of California, Berkeley, CA, USA.
Túlio MorganDepartamento de Microbiologia, Instituto de Biotecnologia Aplicada à Agropecuária, Viçosa 36570-900, MG, Brazil.
Rafael R de RezendeDepartamento de Microbiologia, Instituto de Biotecnologia Aplicada à Agropecuária, Viçosa 36570-900, MG, Brazil.
Britt KoskellaDepartment of Integrative Biology, University of California, Berkeley, CA, USA.
Poliane Alfenas-ZerbiniDepartamento de Microbiologia, Instituto de Biotecnologia Aplicada à Agropecuária, Viçosa 36570-900, MG, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mobilome, defined as the collection of mobile genetic elements within a bacterial genome, plays a role in the adaptation of bacteria to abiotic and biotic drivers. In particular, prophages have been reported to contribute to bacterial resistance to virulent bacteriophages, to competitive interactions among bacterial hosts within microbial communities and to pathogenicity and virulence. It is, therefore, critical to better understand the role of prophages in distributing genes and functions within and among bacterial species to predict how bacteria adapt to their biotic environment.

Indexed as

Gene Transfer, HorizontalProphagesPseudomonas PhagesPseudomonas syringaeConserved SequenceEvolution, MolecularGenetic VariationGenome, BacterialGenomicsInterspersed Repetitive SequencesPhylogenyaccessory genomehorizontal gene transferpathogen adaptationProphagePseudomonas syringae

Identifiers

PMID42149652
PMCPMC13182921

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.