Evidence map›Paper›PMID 42148659›Full record

ArticleBlood2026

Stag2-dependent chromatin remodeling enforces the erythroid-specific Gata1 cistrome.

Varun S Sudunagunta, Edna M Stewart, Yi Chen, Hongxia Yan, Sebastian Fernando, Viviana Scoca, John Pantazi, Rong Deng, Jane J Xu, Narla Mohandas and 1 more

Abstract read
In one paragraph

Article in Blood, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Varun S SudunaguntaColumbia University Vagelos College of Physicians and Surgeons, New York, NY.ORCID 0000-0002-8639-8907
Edna M StewartHerbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY.ORCID 0009-0001-5949-7301
Yi ChenHerbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY.ORCID 0000-0002-4891-8289
Hongxia YanRed Cell Physiology Laboratory, Lindsley F. Kimball Research Institute, New York Blood Center, New York, NY.ORCID 0000-0002-8187-2788
Sebastian FernandoDivision of Hematology/Oncology, Department of Medicine, Columbia University Irving Medical Center, New York, NY.ORCID 0000-0001-7571-8904
Viviana ScocaHerbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY.ORCID 0000-0003-3791-7499
John PantaziDivision of Hematology/Oncology, Department of Medicine, Columbia University Irving Medical Center, New York, NY.
Rong DengHerbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY.ORCID 0000-0001-5170-3361
Jane J XuHerbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, NY.ORCID 0000-0001-5065-4860
Narla MohandasRed Cell Physiology Laboratory, Lindsley F. Kimball Research Institute, New York Blood Center, New York, NY.ORCID 0000-0003-2271-5296
Aaron D VinyColumbia University Vagelos College of Physicians and Surgeons, New York, NY.ORCID 0000-0001-7039-0110

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
New York Consortium for Interdisciplinary Training in Kidney, Urological and Hematological Research (NYC Train KUHR)U2CDK129502 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Michal L Melamed · 2022 to 2026
$3.1M
Millipore Sigma ImageStream-X Mark II Imaging CytometerS10OD026845 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PASSEGUE, EMMANUELLE · 2019 to 2019
$553k
National Institutes of Health (NIH)/National Cancer Institute (NCI R37-CA28657NCATS NIH HHS UL1 TR001873NCATS NIH HHS UL1-TR001873NCI NIH HHS P30-CA012696NIDDK NIH HHS U2C DK129502NIDDK NIH HHS U2C-DK129502NIH HHS S10 OD026845NIH HHS S10-OD026845
6 · The paper itself

Abstract

abstractThe transcription factor GATA1 has pleiotropic hematopoietic functions, particularly in erythroid and megakaryocytic ontogeny. Although mechanistic investigations have uncovered many facets of GATA1 biology, how GATA1 coregulates divergent cell fates remains incompletely characterized. We previously described that loss of Stag2, a member of the cohesin complex and a recurrent mutational target in myelodysplastic syndrome (MDS) and myeloid leukemia of Down syndrome, results in altered chromatin accessibility, transcription factor function, and cell differentiation. Therefore, we hypothesized that chromatin accessibility determines GATA1 cistrome specificity and lineage fate decisions. To understand the connection between chromatin accessibility and GATA1, we comprehensively studied erythropoiesis in Stag2Δ mice. Defects in Stag2-deficient hematopoiesis included reduced numbers of erythroid progenitors (EryPs), impaired terminal erythroid differentiation, increased number of megakaryocyte progenitors, and increased megakaryocytes. RNA- and assay for transposase-accessible chromatin-sequencing of EryPs revealed altered patterns of Gata1 target gene expression with altered accessibility in conjunction with loss of expression of erythroid targets and gain of megakaryocyte targets. Despite unchanged Gata1 expression, Gata1 occupancy was reprogrammed from erythroid to megakaryocyte targets with Fli1 motifs enriched at Stag2Δ Gata1 binding sites. Functionally, we observed that Stag2-deficient EryPs have a diminished erythroid output and augmented megakaryocyte output in orthogonal differentiation assays, which was partially reversed with Fli1 knockdown. Human models and patients with primary MDS recapitulated the essential phenotypic and molecular features of our in vivo murine MDS model. Collectively, this study establishes chromatin accessibility as a determinant of transcription factor binding specificity, revealing an accessibility-driven Gata1 retargeting mechanism underlying MDS dyserythropoiesis.

Indexed as

Cell Cycle ProteinsChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneErythropoiesisGATA1 Transcription FactorAnimalsCell DifferentiationCohesinsErythroid CellsHumansMegakaryocytesMiceMice, KnockoutCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsGata1 protein, mouseGATA1 Transcription Factor

Identifiers

PMID42148659
PMCPMC13487485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.