Evidence map›Paper›PMID 42146692›Full record

ArticlebioRxiv : the preprint server for biology2026

An agent-based model suggests how senescent cell behavior and matrix mechanics drive pulmonary fibrosis in aged mice.

Mackenzie L Skelton, Julie Leonard-Duke, Leilani R Astrab, Joshua A Goedert, Riley T Hannan, Shayn M Peirce, Jeffrey M Sturek, Steven R Caliari

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mackenzie L SkeltonDepartment of Biomedical Engineering, University of Virginia.
Julie Leonard-DukeDepartment of Biomedical Engineering, University of Virginia.ORCID 0000-0002-6278-7190
Leilani R AstrabDepartment of Biomedical Engineering, University of Virginia.
Joshua A GoedertDepartment of Biomedical Engineering, University of Virginia.
Riley T HannanDepartment of Medicine, Division of Pulmonary and Critical Care, University of Virginia.
Shayn M PeirceDepartment of Biomedical Engineering, University of Virginia.
Jeffrey M SturekDepartment of Medicine, Division of Pulmonary and Critical Care, University of Virginia.ORCID 0000-0002-2731-3299
Steven R CaliariDepartment of Biomedical Engineering, University of Virginia.ORCID 0000-0002-7506-3079

Funding

Designing cell-instructive hydrogels to understand and exploit mechanobiologyR35GM138187 · NIGMS · UNIVERSITY OF VIRGINIA · PI CALIARI, STEVEN · 2020 to 2024
$1.8M
Oxidation-Specific Epitope IgA in Pulmonary FibrosisR01HL179312 · NHLBI · UNIVERSITY OF VIRGINIA · PI Jeffrey Michael Sturek · 2025 to 2026
$1.6M
Designing cell-instructive viscoelastic hydrogels to understand and exploit mechanobiologyR35GM162024 · NIGMS · UNIVERSITY OF VIRGINIA · PI Steven Caliari · 2026 to 2026
$415k
Role of Natural Antibodies and B1 cells in Fibroproliferative Lung DiseaseF32HL170760 · NHLBI · UNIVERSITY OF VIRGINIA · PI HANNAN, RILEY T · 2023 to 2025
$150k
NHLBI NIH HHS F32 HL170760NHLBI NIH HHS R01 HL179312NIGMS NIH HHS R35 GM138187NIGMS NIH HHS R35 GM162024
6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis (IPF) is a progressive and ultimately fatal disease of aging, driven by dysregulated fibroblast activation and accompanied by collagen accumulation in the lung interstitium, resulting in tissue stiffening. While the accumulation of senescent cells has been increasingly implicated in IPF pathogenesis, understanding the reciprocal dynamics of senescent fibroblast levels and evolving tissue mechanics is difficult to achieve with experimental approaches alone. To address this limitation, we developed an agent-based model (ABM) of fibroblast activation in the lung that couples cell behavior to the dynamic mechanical changes accompanying fibrosis. This model was parameterized entirely from experimental data in young mice to enable robust validation and then adapted to fit aged mouse biology for additional validation. Both young and aged models accurately reflected changes in collagen accumulation and stiffness burden of experimental systems. We then incorporated senescent cell behavior into the aged model to investigate how senescent cell burden influences fibrosis progression and how cell-cell interactions drive senescent cell accumulation. These simulations identified a unique role for juxtacrine-mediated contact between non-senescent and senescent fibroblasts in expanding the total senescent cell burden. Our ABM also revealed that the timing of immune-mediated senescent cell clearance critically regulates fibrotic outcomes. Together, this ABM provides useful insights into how the interrelated dynamics of tissue mechanics and senescent fibroblasts drive fibrosis progression.

Identifiers

PMID42146692
PMCPMC13174322

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.