Evidence map›Paper›PMID 42146620›Full record

ArticlebioRxiv : the preprint server for biology2026

ANYI: The ANnotated Yeast Interactome.

Daniel A Nissley, Muskan Goel, Xavier Castellanos-Girouard, Charles P Kuntz, Yiqing Wang, M Shahid Mukhtar, Adrian Serohijos, Jonathan P Schlebach

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Daniel A NissleyNational Synthesis Center for Emergence in the Molecular and Cellular Sciences, National Science Foundation, USA.ORCID 0000-0003-0550-9394
Muskan GoelThe James Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, IN, USA.
Xavier Castellanos-GirouardDépartement de Biochimie, Université de Montréal, Montreal, Quebec, Canada.
Charles P KuntzThe James Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, IN, USA.
Yiqing WangDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, USA.
M Shahid MukhtarDepartment of Genetics and Biochemistry, Clemson University, Clemson, SC, USA.
Adrian SerohijosDépartement de Biochimie, Université de Montréal, Montreal, Quebec, Canada.
Jonathan P SchlebachThe James Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, IN, USA.

Funding

Molecular Mechanisms of Membrane Protein Misfolding and Quality Control in Cellular ProteostasisR35GM152086 · NIGMS · PURDUE UNIVERSITY · PI Jonathan Patrick Schlebach · 2024 to 2026
$1.5M
NIGMS NIH HHS R35 GM152086
6 · The paper itself

Abstract

Although several existing protein-protein interaction (PPI) databases provide yeast PPI data, none unify large-scale network topology information with detailed biophysical, proteostasis, and regulatory annotations in a single protein-centric framework. To address this gap, we developed the ANnotated Yeast Interactome (ANYI), an open, integrated resource that combines experimental yeast PPIs with sixteen feature annotation types, including protein abundance, half-life, disorder content, post-translational modifications, conformational stability, chaperone interactions, sequence, and structure. ANYI integrates 3,927 proteins with 155 annotation features, forming a unified matrix that enables systematic cross-layer analyses. Available via GitHub and Docker Hub with an interactive network browser for broad accessibility, ANYI provides both experienced and beginner computational scientists with tools to investigate the yeast interactome. For example, users can directly test whether highly connected hub proteins exhibit distinct stability, disorder, or proteostasis signatures relative to peripheral nodes.

Identifiers

PMID42146620
PMCPMC13174366

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.