Evidence map›Paper›PMID 42146575›Full record

ArticlebioRxiv : the preprint server for biology2026

Dynamics of synthetic transcriptional condensates emerge from RNA synthesis and degradation.

Jane Liao, So Yeon Ahn, Allie C Obermeyer

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jane LiaoDepartment of Chemical Engineering, Columbia University, New York City, 10027, NY, USA.ORCID 0009-0007-2092-4787
So Yeon AhnDepartment of Chemical Engineering, Columbia University, New York City, 10027, NY, USA.ORCID 0000-0001-9140-2432
Allie C ObermeyerDepartment of Chemical Engineering, Columbia University, New York City, 10027, NY, USA.ORCID 0000-0003-2412-2021

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Combination CD-Fluorescence Polarization Spectrophotometer for the Columbia Precision Biomolecular Characterization FacilityS10OD025102 · OD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HUNT, JOHN FRANCIS · 2018 to 2018
$138k
NCI NIH HHS P30 CA013696NIH HHS S10 OD025102
6 · The paper itself

Abstract

At sites of active gene expression, dynamic compartments known as transcriptional condensates assemble and dissolve on timescales relevant to RNA synthesis and degradation. Yet how the non-equilibrium dynamics of these condensates emerge from the coupling of RNA concentration and phase separation remains poorly understood. Here we engineer synthetic active condensates in which T7 RNA polymerase transcribes RNA in situ, triggering phase separation with a cationic scaffold protein. By using RNA concentration as a tunable parameter, we drive condensates along defined paths through a characterized phase diagram. This reaction-phase separation coupling gives rise to three emergent dynamic phenomena not accessible in passive systems: a rapid switch-like nucleation burst, RNA-mediated positive and negative feedback regulation of transcription, and oscillatory condensate formation in which RNA degradation spontaneously renucleates condensates. Together, these results show that the dynamic functions of transcriptional condensates emerge from their reaction-driven paths through phase space, providing a quantitative framework for understanding how RNA flux governs condensate dynamics in living cells.

Indexed as

active phase separationBiomolecular condensatecomplex coacervationnon-equilibrium dynamicsprotocelltranscriptional condensate

Identifiers

PMID42146575
PMCPMC13174545

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.