Evidence map›Paper›PMID 42146448›Full record

ArticlebioRxiv : the preprint server for biology2026

Spatially defined axonal guidance in neural organoids with micropatterned microfluidic channels.

Ariana Cisneros, Maryam Moarefian, Jens Duru, Katherine Karinicolas, Talia Goodman, Zaira Gonzalez, Anton Zatserklyaniy, Sawyer McKenna, Asia Anderson, Noah Wiliams and 5 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Ariana CisnerosDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0000-0003-1813-1642
Maryam MoarefianUC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA.ORCID 0000-0002-1875-0614
Jens DuruDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0000-0003-2381-1511
Katherine KarinicolasDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Talia GoodmanDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Zaira GonzalezDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Anton ZatserklyaniyDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Sawyer McKennaDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Asia AndersonDepartment of Chemical Biology, Biochemistry and Biophysics, University of California Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0009-0001-3521-8590
Noah WiliamsDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0009-0002-7812-7741
Gregory KauralaDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Estefania SanchezDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0000-0002-6585-8548
Ali ShariatiDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0000-0002-3650-4820
Mircea TeodorescuDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0000-0001-7085-5248
Tal SharfDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.ORCID 0000-0002-7899-2818

Funding

IRACDA at UCSC and CSUMBK12GM139185 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI FORSBERG, CAMILLA, HINCK, LINDSAY E · 2020 to 2024
$4.1M
Molecular feedback between cell division cycle and differentiation in pluripotent stem cellsR35GM147395 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Ali Shariati · 2022 to 2026
$1.9M
UCSC Graduate Program in Genome SciencesT32HG012344 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Angela Norie Brooks, Christopher Vollmers · 2022 to 2026
$1.5M
NHGRI NIH HHS T32 HG012344NIGMS NIH HHS K12 GM139185NIGMS NIH HHS R35 GM147395
6 · The paper itself

Abstract

Three-dimensional stem cell-derived neural organoids provide a promising platform for investigating early brain development and interregional circuit formation. Although co-culture of region-specific organoids into assembloids has enabled the study of cortical and subcortical interactions, these models lack directional specificity and spatial control, limiting their ability to recapitulate canonical circuit architecture. Here, we present a microfluidic platform for constructing directional and tunable interregional circuits while preserving anatomical distinction. This system, which we term "directoids" incorporates micropatterned polydimethylsiloxane (PDMS) microstructures to control uni- and bidirectional axonal growth between cortical and thalamic organoids. We observed a 70.4% success rate of axons traversing the full channel length in the permissive direction and reaching the opposing organoid, whereas no neurites successfully crossed the probative direction. These results demonstrate robust directionally bias in axon outgrowth and establish a scalable, reproducible strategy for controlling asymmetric connectivity between anatomically distinct neural organoids. Using high-density CMOS microelectrode arrays, we further validated directional tuning of extracellular action potential propagation within directoid microchannels, a feature not observed in straight-channel connectoid controls. Directoids also exhibited significant asymmetry in firing rates between channel entry and exit sites, consistent with engineered bias in signal flow. This provides an experimental paradigm for dissecting how anatomical connectivity and functional activity converge to shape neuronal networks. Together, these findings establish a microfluidic platform for investigating the mechanisms underlying hierarchical circuit formation, regional specification, and functional integration in developing human neural organoid models at cellular resolution not possible

Identifiers

PMID42146448
PMCPMC13174506

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.