Evidence map›Paper›PMID 42144883›Full record

ArticleImmunology and cell biology2026

Functional immune profiling reveals CD4

Anthony J Farchione, HoChan Cheon, David Vremec, Julika Neumann, Gwenny M Verstappen, Melinda Y Hardy, Mai B Margetts, Lauren J Howson, Lee M Henneken, Maureen Forde and 4 more

Abstract read
In one paragraph

Article in Immunology and cell biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Anthony J FarchioneWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID https://orcid.org/0000-0001-5234-0259
HoChan CheonWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID https://orcid.org/0000-0002-3004-6152
David VremecWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Julika NeumannWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Gwenny M VerstappenWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Melinda Y HardyWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID https://orcid.org/0000-0003-4923-0678
Mai B MargettsWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Lauren J HowsonWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID https://orcid.org/0000-0003-3522-4533
Lee M HennekenWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Maureen FordeWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Jason A Tye-DinWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID https://orcid.org/0000-0001-7687-9654
Susanne HeinzelWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID https://orcid.org/0000-0001-9524-2835
Philip D HodgkinWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Vanessa L BryantWalter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID https://orcid.org/0000-0002-4697-7410

Funding

DW Keir FellowshipNational Health and Medical Research Council 1127198National Health and Medical Research Council 1164800National Health and Medical Research Council 1176553National Health and Medical Research Council 1176588Sir Clive McPherson Family FellowshipSnow Centre for Immune Health
6 · The paper itself

Abstract

T cells integrate signals from antigen and costimulatory receptors to calibrate response magnitude and quality, with genetically encoded programs shaping activation thresholds for immune tolerance and feedback regulation. Coeliac disease (CeD) is an autoimmune disorder with well-defined genetic risk and immune dysregulation triggered by dietary gluten. However, how genetic risk translates into cell-intrinsic functional variation, particularly within the naïve T-cell compartment, remains poorly defined. Here, we developed the T cell momentum assay, a quantitative functional profiling platform combining standardized T-cell activation with defined stimulus withdrawal to measure proliferation, survival and activation dynamics over time. Integrated with the Cyton2 mathematical model, this approach infers cellular fate programs from population-level dynamics, enabling high-resolution analysis of intrinsic T-cell behavior. Applying this assay to naïve T cells from individuals with CeD and healthy donors (HDs), we identified disease-associated abnormalities predominantly in CD4

Indexed as

CD4-Positive T-LymphocytesCeliac DiseaseCD8-Positive T-LymphocytesCell ProliferationHumansLymphocyte ActivationCD4+ T cellsCoeliac diseaseIL‐2Immune dysregulationMathematical modellingT cell activation

Identifiers

PMID42144883
PMCPMC13331542

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.