Evidence map›Paper›PMID 42138049›Full record

ArticleVirulence2026

Phylogenomic framework and virulence gene boundaries of emerging Shiga toxin-producing

Irvin Rivera, Sara S K Koenig, Armando L Rodriguez, Joseph M Bosilevac, Mark Eppinger

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Virulence, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Irvin RiveraDepartment of Molecular Microbiology & Immunology, University of Texas at San Antonio, San Antonio, TX, USA.ORCID 0009-0005-0647-3559
Sara S K KoenigDepartment of Molecular Microbiology & Immunology, University of Texas at San Antonio, San Antonio, TX, USA.
Armando L RodriguezResearch Computing Support Group, University of Texas at San Antonio, San Antonio, TX, USA.
Joseph M BosilevacU.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), U.S. Meat Animal Research Center, Clay Center, NE, USA.
Mark EppingerDepartment of Molecular Microbiology & Immunology, University of Texas at San Antonio, San Antonio, TX, USA.

Funding

Identification of Regulatory Loci of Stx2a Cytotoxin Production in Shiga toxin producing Escherichia coli (STEC)SC1GM135110 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI EPPINGER, MARK · 2020 to 2023
$1.5M
NIGMS NIH HHS SC1 GM135110
6 · The paper itself

Abstract

Non-O157 Shiga toxin-producing

Indexed as

Genome, BacterialPhylogenyShiga-Toxigenic Escherichia coliVirulence FactorsEscherichia coli InfectionsEscherichia coli ProteinsHumansMultilocus Sequence TypingSerogroupVirulenceEscherichia coli ProteinsVirulence Factorscomparative phylogenomicsmulti-locus sequence typingserogroups O118 and O151Shiga toxin-producing Escherichia coli (STEC)whole genome sequencing

Identifiers

PMID42138049
PMCPMC13182975

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.