Evidence map›Paper›PMID 42130163›Full record

ArticleThe New phytologist2026

Fine-tuning quantitative agronomic traits by manipulating gene copy number in rice.

Chihiro Nomura, Hiroyuki Kanzaki, Eiko Kanzaki, Motoki Shimizu, Kaori Oikawa, Hiroe Utsushi, Kazue Ito, Yusaku Sugimura, Ryohei Terauchi, Akira Abe

Abstract read
In one paragraph

Article in The New phytologist, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Chihiro NomuraDepartment of Genomics and Breeding, Iwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.ORCID https://orcid.org/0009-0001-4574-4279
Hiroyuki KanzakiDepartment of Genomics and Breeding, Iwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.
Eiko KanzakiDepartment of Genomics and Breeding, Iwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.
Motoki ShimizuDepartment of Genomics and Breeding, Iwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.ORCID https://orcid.org/0000-0002-5622-5554
Kaori OikawaDepartment of Genomics and Breeding, Iwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.
Hiroe UtsushiDepartment of Genomics and Breeding, Iwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.
Kazue ItoDepartment of Genomics and Breeding, Iwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.
Yusaku SugimuraDepartment of Genomics and Breeding, Iwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.ORCID https://orcid.org/0000-0001-7271-7703
Ryohei TerauchiDepartment of Genomics and Breeding, Iwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.ORCID https://orcid.org/0000-0002-0095-4651
Akira AbeDepartment of Genomics and Breeding, Iwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.ORCID https://orcid.org/0000-0002-0344-2643

Funding

Bio-oriented Technology Research Advancement Institution JPJ007097Japan Society for the Promotion of Science KAKENHI JP22K20584Japan Society for the Promotion of Science KAKENHI JP23K26882
6 · The paper itself

Abstract

Although plant pan-genome studies have revealed extensive copy number variations, their phenotypic consequences remain poorly understood. Here, we manipulated the copy number of OsMADS18 in rice (Oryza sativa) cv 'Hitomebore' using the CRISPR/Cas9 system. We established rice lines harboring one to three tandem copies of OsMADS18, as identified by quantitative PCR and sequencing. The presence of one to three OsMADS18 tandem copies was reflected in stepwise increases in transcript levels and concomitant agronomic trait values. These results demonstrate that manipulating gene copy number can fine-tune important quantitative traits, providing a novel breeding strategy for crop improvement.

Indexed as

Gene DosageOryzaQuantitative Trait, HeritableCRISPR-Cas SystemsGene Expression Regulation, PlantGenes, PlantPhenotypePlant ProteinsPlants, Genetically ModifiedPlant Proteinscopy number variationCRISPRgene dosageOsMADS18rice

Identifiers

PMID42130163
PMCPMC13373809

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.