Evidence map›Paper›PMID 42127231›Full record

ArticleChemistry & biodiversity2026

Berberine Attenuates Chromobacterium violaceum's Virulence by Targeting Efflux and Denitrification Machinery.

Nidhi Thakkar, Gemini Gajera, Vijay Kothari

Abstract read
In one paragraph

Article in Chemistry & biodiversity, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nidhi ThakkarInstitute of Science, Nirma University, Ahmedabad, India.ORCID https://orcid.org/0009-0005-6781-4441
Gemini GajeraInstitute of Science, Nirma University, Ahmedabad, India.ORCID https://orcid.org/0000-0002-1604-912X
Vijay KothariInstitute of Science, Nirma University, Ahmedabad, India.ORCID https://orcid.org/0000-0003-1035-7217

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
NERF (Nirma Education and Research Foundation)NIH HHS P40 OD010440
6 · The paper itself

Abstract

Berberine is known to be a major bioactive compound from the plant Berberis aristata. As a quaternary isoquinoline alkaloid, berberine exhibits superior stability and pleiotropic antimicrobial efficacy compared to its phytochemical counterparts, owing to its unique cationic structure and multi-targeted mechanism of action. This study evaluated the anti-pathogenic potential of B. aristata root extract and its primary bioactive constituent, berberine, against a multidrug-resistant (MDR) strain of Chromobacterium violaceum. Investigations utilized in vivo survival assays with the model host Caenorhabditis elegans, phenotypic characterization of virulence determinants (biofilm, hemolytic activity, efflux activity), and whole-transcriptome sequencing to elucidate disrupted molecular pathways. Berberine demonstrated significantly higher potency than both the crude extract and six conventional antibiotics, effectively attenuating pathogen virulence and inhibiting efflux mechanisms without the induction of resistance. Transcriptomic and RT-PCR analyses confirmed that berberine targets the bacterial denitrification pathway through the significant downregulation of nirK and norB genes. These findings advance the literature by demonstrating berberine as a useful nontraditional antibacterial agent that exerts its anti-pathogenic effect through the simultaneous genetic and phenotypic suppression of bacterial virulence.

Indexed as

Anti-Bacterial AgentsBerberineChromobacteriumAnimalsBerberisBiofilmsCaenorhabditis elegansDenitrificationMicrobial Sensitivity TestsPlant RootsVirulenceAnti-Bacterial AgentsBerberineantimicrobial resistance (AMR)Caenorhabditis elegansdenitrificationemerging pathogentranscriptomevirulence

Identifiers

PMID42127231
PMCPMC13376437

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.