Evidence map›Paper›PMID 42124951›Full record

ArticleComputers & chemical engineering2026

Hyperparameter Optimization of Non-linear Machine Learning Models Using Bi-level Data-Driven Optimization.

Amir Shahbazi, Hasan Nikkhah, Zahir Aghayev, Burcu Beykal

Abstract read
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Article in Computers & chemical engineering, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Amir ShahbaziDepartment of Chemical & Biomolecular Engineering, University of Connecticut, , Storrs, 06269, CT, USA.
Hasan NikkhahDepartment of Chemical & Biomolecular Engineering, University of Connecticut, , Storrs, 06269, CT, USA.
Zahir AghayevDepartment of Chemical & Biomolecular Engineering, University of Connecticut, , Storrs, 06269, CT, USA.
Burcu BeykalDepartment of Chemical & Biomolecular Engineering, University of Connecticut, , Storrs, 06269, CT, USA.

Funding

Single cell, multi-parametric high throughput platform to classify endocrine disruptor potential of mixturesP42ES027704 · NIEHS · TEXAS A&M UNIVERSITY · PI Thomas Joseph McDonald · 2017 to 2026
$21.2M
NIEHS NIH HHS P42 ES027704
6 · The paper itself

Abstract

This study presents a systematic decision-making approach for tuning hyperparameters of machine learning (ML) models that employ the cross-validation technique in their learning process. It provides a more efficient and precise alternative to conventional hyperparameter optimization methods (i.e., grid search, random search, and Bayesian optimization) and demonstrates that bi-level data-driven optimization enhances this task, especially when non-linear loss functions are used in the training process. Hyperparameters are external adjustable parameters that configure and control the learning process of ML models and cannot be estimated directly from the training data. Their tuning plays a crucial role in constructing accurate and generalized ML models. However, this process is often treated as a trial-and-error search, where numerous hyperparameter combinations are evaluated through training and validation, and the best-performing one is selected after an exhaustive search. An alternative is to pose hyperparameter tuning as a bi-level optimization problem, which explicitly captures the interdependence between hyperparameter selection and model evaluation. This formulation enables a more structured optimization strategy but introduces significant algorithmic and computational challenges. To address this, we use the Data-driven Optimization of bi-level Mixed-Integer non-linear problems (DOMINO) framework to approximate the bi-level formulation of the cross-validated hyperparameter optimization problem as a single-level problem. This transformation enables the use of data-driven methodologies to solve the otherwise intractable bi-level problem more efficiently, while still capturing the unknown interactions between hyperparameter choices and model performance. We evaluate 17 different data-driven optimization algorithms, including heuristic vs. deterministic methods, local vs. global approaches, and sample-based vs. model-based algorithms, on six hyperparameter tuning problems for regression and classification tasks. Our results show that the data-driven bi-level approach outperforms conventional tuning algorithms in predictive accuracy on blind test datasets and yields ML models that exhibit excellent generalization across all case studies. We further observe that local optimization algorithms integrated into DOMINO are more computationally efficient when tuning models with a single hyperparameter, whereas global algorithms are more effective for models involving multiple hyperparameters or non-linear characteristics.

Indexed as

Cross-validationData-driven OptimizationHyperparameter TuningMachine Learning

Identifiers

PMID42124951
PMCPMC13160373

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.