Evidence map›Paper›PMID 42124597›Full record

ArticlebioRxiv : the preprint server for biology2026

Morphoelectric Diversity and Specialization of Neuronal Cell Types in the Primate Striatum.

Xiao-Ping Liu, Rachel Dalley, Nelson Johansen, Agata Budzillo, Julian Thijssen, Jeremy A Miller, Sarah Walling-Bell, Scott Sawchuk, Lauren Alfiler, Julia Andrade and 82 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

92 authors.

Xiao-Ping LiuAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-3449-7601
Rachel DalleyAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-7461-7845
Nelson JohansenAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-4436-969X
Agata BudzilloAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-2723-3272
Julian ThijssenLKEB, Department of Radiology, Leiden University Medical Center, Leiden, Netherlands.ORCID 0009-0007-7585-6451
Jeremy A MillerAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-4549-588X
Sarah Walling-BellAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-6995-2681
Scott SawchukAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0001-2557-4321
Lauren AlfilerAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-4847-7900
Julia AndradeAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-6155-5374
Angela AyalaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0002-8512-6851
Stuard BartaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-7180-3466
Kyla BerryAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-0632-6322
Darren BertagnolliAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-6626-1567
Ashwin BhandiwadAllen Institute for Brain Science, Seattle, WA 98109, USA.
Madeline BixbyAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0008-9907-0338
Krista BlakeAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0000-5703-5499
Krissy BrounerAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-5790-7154
Trangthanh CardenasAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-4738-5062
Tamara CasperAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-1638-3651
Anish Bhaswanth ChakkaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-1095-1817
Thomas ChartrandAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-7093-8681
Scott DanielAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-8319-2359
Nicholas DonadioAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-6250-1148
Nadezhda I DotsonAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-3414-3176
Tom EgdorfAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-9059-8904
Rachel EnstromAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-0100-927X
Yuanyuan FuAllen Institute for Brain Science, Seattle, WA 98109, USA.
Amanda GaryAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-6397-1520
Jeff GoldyAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-5140-6922
Melissa GorhamAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-6770-9474
Kristen HadleyAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-4504-8724
Alvin HuangAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0000-9476-8675
Avery C HunkerAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-0508-3637
Atlas JordanAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0006-5527-0608
Zoe C JuneauAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-8860-5260
Matthew JungertAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0007-6600-9250
Madhav KannanAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0006-5104-4355
Inkar KapenAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0007-0159-0590
Shannon KhemAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0002-6949-1381
Megan KochAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0008-8271-8572
Katalin KocsisDepartment of Physiology, Anatomy, and Neuroscience, University of Szeged, Szeged, Hungary.
Rana KutsalAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0008-7190-6498
Gabriela LeonAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0006-0847-2637
Matt MalloryAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-8744-3837
Jocelin MaloneAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-0794-4250
Audrey McCutcheonAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0005-7073-0732
Medea McGrawAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-5267-489X
Kamiliam NasirovaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0001-4672-5045
Dakota NewmanAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-3835-0853
Lindsay NgAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-4134-1608
Ximena Opitz-ArayaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-4960-3622
Alana OyamaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-4492-0533
Elliot PhillipsAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0008-2762-6608
Christina Alice PomAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-9057-040X
Lydia PotekhinaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-8879-7920
Ramkumar RajanbabuAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-7891-7578
Shea T RansfordAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-6093-0806
Ingrid RedfordAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0003-7917-3587
Christine RimorinAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-1491-8552
Dana RochaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0001-2121-8899
Augustin RuizAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-8361-5152
Naz TaskinAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0003-2417-8428
Michael TieuAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-9286-5623
Éva TóthDepartment of Physiology, Anatomy, and Neuroscience, University of Szeged, Szeged, Hungary.
Jessica TrinhAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-5064-8898
Marshall VanNessAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0009-5415-202X
Sara VargasAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0001-6791-6852
Maria Camila VergaraAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0009-8026-8296
Morgan WirthlinAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-7967-7070
Jeanelle ArizaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-0829-7887
Trygve BakkenAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-3373-7386
Nick DeeAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-2831-9254
Nikolai DembrowDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-7699-6591
Song-Lin DingAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-7072-5272
Chris EnglishWashington National Primate Research Center, Seattle, WA 98195.ORCID 0000-0002-7229-3258
Samantha D HastingsAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0009-0008-9107-8597
Tim JarskyAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-4399-539X
Lauren KruseAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-3428-2443
Scott F OwenDepartment of Neurosurgery, Stanford University School of Medicine, Stanford, CA.ORCID 0000-0001-6294-7513
Kimberly A SmithAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-3142-1970
Jack WatersAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-2312-4183
Shenqin YaoAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-2992-4752
Gábor TamásDepartment of Physiology, Anatomy, and Neuroscience, University of Szeged, Szeged, Hungary.ORCID 0000-0002-7905-6001
Boudewijn LelieveldtLKEB, Department of Radiology, Leiden University Medical Center, Leiden, Netherlands.ORCID 0000-0001-8269-7603
Nathan W GouwensAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-8429-4090
Hongkui ZengAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-0326-5878
Staci A SorensenAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-6799-2126
Brian R LeeAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-3210-5638
Jonathan T TingAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-8266-0392
Ed S LeinAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-9012-6552
Brian E KalmbachAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-3136-8097

Funding

Washington National Primate Research CenterP51OD010425 · OD · UNIVERSITY OF WASHINGTON · PI Mari Ostendorf · 2012 to 2026
$201.8M
Functionally guided adult whole brain cell atlas in human and NHPUM1MH130981 · NIMH · ALLEN INSTITUTE · PI Ed Lein, Hongkui Zeng · 2022 to 2026
$91.9M
Open-Access AAV Toolbox for Basal Ganglia Cell Types and CircuitsUF1MH128339 · NIMH · ALLEN INSTITUTE · PI BAKKEN, TRYGVE, DAIGLE, TANYA LYNN · 2021 to 2021
$7.3M
Multimodal analysis of primate infragranular pyramidal neurons and their modulationR01NS123959 · NINDS · ALLEN INSTITUTE · PI DEMBROW, NIKOLAI C, KALMBACH, BRIAN E. · 2021 to 2025
$2.8M
NIH HHS P51 OD010425NIMH NIH HHS UF1 MH128339NIMH NIH HHS UM1 MH130981NINDS NIH HHS R01 NS123959
6 · The paper itself

Abstract

The basal ganglia are evolutionary ancient subcortical nuclei that form interconnected loops with the neocortex and limbic system to regulate movement, learning, habit formation, emotion, and motivation. Their dysfunction contributes to major neurological and psychiatric disorders, yet most cellular-level insights derive from rodent studies, leaving knowledge gaps in humans and translationally relevant primate species. To address this, we generated multi-modal Patch-seq data linking transcriptomic identity with morphological and electrophysiological properties in macaque striatum, the input nucleus of the basal ganglia. We found underappreciated diversity among medium spiny neurons, including non-canonical types, and variation aligned with functional gradients. Interneurons also exhibited spatial variation and even greater morphoelectric diversity, highlighting their functional modularity. Despite broad evolutionary conservation, we identified primate-specific features and key differences from rodent striatal neurons. By integrating molecular classification with cellular properties that shape network function, our findings provide insights into the functional organization of the primate striatum.

Indexed as

Basal gangliaIntrinsic propertiesMacaqueMedium spiny neuronsNeuronal morphologyPatch-seqSingle cell RNA sequencingStriatum

Identifiers

PMID42124597
PMCPMC13160158

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.