Evidence map›Paper›PMID 42121178›Full record

ArticleRespiratory research2026

Identification of oxygenation impairment-associated gene networks in ARDS through integrated mRNA and miRNA analysis.

Yumi Mitsuyama, Hisatake Matsumoto, Takeshi Ebihara, Daisuke Okuzaki, Hiroshi Ogura, Jun Oda

Abstract read
In one paragraph

Article in Respiratory research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yumi MitsuyamaDepartment of Traumatology and Acute Critical Medicine, Graduate School of Medicine, The University of Osaka, 2-15 Yamadaoka, Suita, 565-0871, Osaka, Japan.
Hisatake MatsumotoDepartment of Traumatology and Acute Critical Medicine, Graduate School of Medicine, The University of Osaka, 2-15 Yamadaoka, Suita, 565-0871, Osaka, Japan. h-matsumoto@hp-emerg.med.osaka-u.ac.jp.
Takeshi EbiharaDepartment of Traumatology and Acute Critical Medicine, Graduate School of Medicine, The University of Osaka, 2-15 Yamadaoka, Suita, 565-0871, Osaka, Japan.
Daisuke OkuzakiLaboratory of Human Immunology (Single Cell Genomics), WPI-IFReC, The University of Osaka, 3-1 Yamadaoka, Suita, 565-0871, Osaka, Japan.
Hiroshi OguraDepartment of Traumatology and Acute Critical Medicine, Graduate School of Medicine, The University of Osaka, 2-15 Yamadaoka, Suita, 565-0871, Osaka, Japan.
Jun OdaDepartment of Traumatology and Acute Critical Medicine, Graduate School of Medicine, The University of Osaka, 2-15 Yamadaoka, Suita, 565-0871, Osaka, Japan.

Funding

Grant-in-Aid for Scientific Research from the Japan Society for the Promotion of Science 22K09132Grant-in-Aid for Scientific Research from the Japan Society for the Promotion of Science 23K27701Japan Agency for Medical Research and Development 20fk0108404h0001
6 · The paper itself

Abstract

backgroundAcute respiratory distress syndrome (ARDS) is associated with high mortality and complex pathophysiology, yet molecularly targeted therapies remain undeveloped. In particular, the microRNA (miRNA)-mRNA regulatory network underlying ARDS is poorly understood. This study aimed to elucidate the miRNA-mRNA interactions associated with the pathophysiology of ARDS.

methodsmRNA-Seq and miRNA-Seq were performed in 34 patients with ARDS and healthy controls. Gene and miRNA co-expression modules were constructed using Weighted Gene Co-expression Network Analysis. miRNA-mRNA regulatory relationships were inferred through an integrated analysis of predicted and experimentally validated miRNA targets. Molecular signatures were quantified via single-sample gene set enrichment analysis, and module structure preservation was evaluated in an external pneumonia cohort.

resultsA key mRNA co-expression module was identified that exhibited the strongest negative correlation with the P/F ratio, along with a negatively correlated miRNA co-expression module. The miRNA module, centered on miR-361-5p and miR-186-5p, formed a regulatory network broadly controlling gene clusters involved in ubiquitin ligase activity and cellular stress response pathways. This network demonstrated a strong association with the P/F ratio and showed high structural preservation in the external pneumonia cohort.

conclusionA miRNA-mRNA regulatory network linked to impaired oxygenation in patients with ARDS has been identified. The network highlights miRNAs as potential key regulators of disease progression and suggests their utility as biomarkers of disease severity and prospective therapeutic targets.

Indexed as

Gene Regulatory NetworksMicroRNAsOxygenRespiratory Distress SyndromeRNA, MessengerFemaleGene Expression ProfilingHumansMaleMiddle AgedMicroRNAsOxygenRNA, MessengerARDSmicroRNAmRNARegulatory networkTranscriptome

Identifiers

PMID42121178
PMCPMC13343553

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.