Evidence map›Paper›PMID 42116209›Full record

ArticleBMC research notes2026

Improved molecular kit-based workflow to unlock the genomic potential of historical coral type specimens.

Declan Morrissey, Claudia F Vaga, Kaela A Coil, Herman Wirshing, Andrea M Quattrini

Abstract read
In one paragraph

Article in BMC research notes, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Declan Morrissey *Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20560, USA. morrisseyd@si.edu.
Claudia F Vaga *Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20560, USA. vagac@si.edu.
Kaela A CoilDepartment of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20560, USA.
Herman WirshingDepartment of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20560, USA.
Andrea M QuattriniDepartment of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20560, USA.

Funding

NOAA's National Centers for Coastal Ocean Science, Competitive Research Program and Office of Ocean Exploration and Research NA18NOS4780166
6 · The paper itself

Abstract

objectiveHistoric and museum specimens' molecular data are of paramount importance to investigate the systematics and taxonomy of extant taxa. However, the recovery of informative and reliable DNA sequences from such specimens is often hampered by severe degradation. Existing alternative laboratory workflows that can improve DNA recovery from historical material are frequently time-consuming, not cost-effective, and technically demanding, limiting their accessibility to many research groups. This study aimed to present an improved, kit-based molecular workflow - with optimized troubleshooting steps - that uses widely available commercial kits for DNA extraction, secondary purification, and library preparation.

resultsThe workflow here presented enabled the recovery of between 41 and 2,431 nuclear ultraconserved elements (UCEs) from 14 coral type specimens collected between 1852 and 2006. In addition, partial 28S rDNA markers were recovered from all specimens, and 11 complete mitochondrial genomes. Phylogenetic placement of the samples using UCEs data, and ribosomal sequences comparison with publicly available databases demonstrated the reliability of the recovered genomic markers. This workflow provides an accessible, and cost-effective approach to unlock the molecular potential of museum specimens for a wider community of users.

Indexed as

AnthozoaGenomicsWorkflowAnimalsDNA, RibosomalMuseumsPhylogenyRNA, Ribosomal, 28SSequence Analysis, DNADNA, RibosomalRNA, Ribosomal, 28SAnthozoaDNA extractionDNA purificationGenome skimmingLibrary preparationMuseum collectionsOctocoralliaScleractinia

Identifiers

PMID42116209
PMCPMC13330036

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.