Evidence map›Paper›PMID 42115739›Full record

ArticleNature microbiology2026

Pooled CRISPRi screening reveals fungal-specific drug target candidates.

Lauren F Wensing, Philippe C Després, Desiree Francis, Meea Fogal, Anthony Hendriks, Nicholas C Gervais, Clara Fikry, Abdul-Rahman Adamu Bukari, Aleeza C Gerstein, Christina A Cuomo and 1 more

Abstract read
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In one paragraph

Article in Nature microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Lauren F Wensing *Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Philippe C Després *Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Desiree FrancisDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Meea FogalDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Anthony HendriksDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Nicholas C GervaisDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0000-0002-9971-0031
Clara FikryDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID http://orcid.org/0009-0008-3016-2314
Abdul-Rahman Adamu BukariDepartment of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada.
Aleeza C GersteinDepartment of Microbiology, Faculty of Science, University of Manitoba, Winnipeg, Manitoba, Canada.ORCID http://orcid.org/0000-0002-0781-9356
Christina A CuomoInfectious Disease and Microbiome Program, Broad Institute, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-5778-960X
Rebecca S ShapiroDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada. shapiror@uoguelph.ca.ORCID http://orcid.org/0000-0002-7119-8865

Funding

Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada) PJT 162195Gouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (Conseil de Recherches en Sciences Naturelles et en Génie du Canada) CGS-DGouvernement du Canada | Natural Sciences and Engineering Research Council of Canada (Conseil de Recherches en Sciences Naturelles et en Génie du Canada) CGS-M
6 · The paper itself

Abstract

The rising rate of drug-resistant fungal infections and the emergence of intrinsically resistant pathogens pose growing clinical challenges. Because fungi are closely related to mammals, developing antifungals without toxic off-target effects is difficult. Targeted gene repression can model drug-mediated inhibition and reveal gene dosage sensitivity, but traditional approaches in the fungal pathogen Candida albicans are labour intensive and low throughput. Here we adapt pooled CRISPR interference (CRISPRi) screening in C. albicans to enable large-scale functional genomic analysis. We assess repression sensitivity of 130 essential genes conserved in fungi without close homologues in humans and identify highly dosage-sensitive genes across multiple pathways. Screening across ten environmental conditions reveals environment-dependent effects on gene sensitivity. Extending these experiments to two drug-resistant clinical isolates shows that many fitness defects are conserved across genetic backgrounds. Thus, CRISPRi pooled screening enables rapid, large-scale functional genomics across diverse genetic backgrounds in C. albicans.

Indexed as

Antifungal AgentsCandida albicansClustered Regularly Interspaced Short Palindromic RepeatsDrug Resistance, FungalHumansAntifungal Agents

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.