Evidence map›Paper›PMID 42115560›Full record

ArticlePharmaceutical research2026

Computational Design and Biopharmaceutical Evaluation of a Chimeric Nanoparticle Vaccine for Targeted Delivery against BK Polyomavirus.

Amin Zahmatkesh, Seyed Nooreddin Faraji, Seyed Younes Hosseini, Ramin Yaghobi

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Article in Pharmaceutical research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Amin ZahmatkeshShiraz Transplant Research Center, Shiraz University of Medical Sciences, Shiraz, Iran.ORCID http://orcid.org/0009-0005-9138-3792
Seyed Nooreddin FarajiDepartment of Pathology, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran.ORCID http://orcid.org/0000-0002-1726-8316
Seyed Younes HosseiniDepartment of Bacteriology & Virology, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran. hoseiniy@sums.ac.ir.ORCID http://orcid.org/0000-0002-5881-6796
Ramin YaghobiShiraz Transplant Research Center, Shiraz University of Medical Sciences, Shiraz, Iran. rayaviro@yahoo.com.ORCID http://orcid.org/0000-0002-9812-8621

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo address the unmet need for a prophylactic therapy against BK polyomavirus (BKPV) in transplant recipients, this study employed a mechanism-based computational approach to design a multi-epitope chimeric nanoparticle (CNP) vaccine, predicting its biopharmaceutical and immunological profile.

methodsA comprehensive computational biopharmaceutics pipeline was implemented. Conserved and immunodominant B-cell, helper T-lymphocyte (HTL), and cytotoxic T-lymphocyte (CTL) epitopes from all major BKPV proteins were identified using immunoinformatic tools. Epitopes were rigorously validated for antigenicity, safety, global population coverage, and cross-reactivity potential against JC polyomavirus. A multi-epitope construct, fused with immune-potentiating peptides, was designed and displayed on an Encapsulin nanocage via the SpyTag/SpyCatcher system to create a targeted delivery platform.

resultsMolecular docking and dynamics simulations demonstrated stable, high-affinity binding of the vaccine construct and the CNP with Toll-like receptors 2 and 4, predicting effective innate immune recognition. In silico immune simulation forecasted robust and durable humoral and cellular immune responses upon administration.

conclusionsThis integrated computational study provides a mechanistic rationale for a novel CNP vaccine candidate against BKPV. The predicted stability, immunogenicity, and targeted delivery potential establish a strong foundation for subsequent in vitro and in vivo development, aligning with the translation of computational design into biopharmaceutical products.

Indexed as

BK VirusNanoparticlesPolyomavirus InfectionsTumor Virus InfectionsViral VaccinesAnimalsBiopharmaceuticsDrug Delivery SystemsDrug DesignEpitopes, T-LymphocyteHumansImmunoinformaticsMolecular Docking SimulationMolecular Dynamics SimulationNanovaccinesEpitopes, T-LymphocyteNanovaccinesViral VaccinesBK polyomavirusComputational biopharmaceuticsDrug delivery systemsNanoparticle vaccineTransplant immunology

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.