Evidence map›Paper›PMID 42112831›Full record

ArticlemBio2026

A rapid yeast-based reverse genetics system reveals SARS-CoV-2 Omicron BA.2.86 variant spreads faster than Omicron JN.1 variant in primary human nasal and bronchial epithelial airway cultures.

Jiayu Xu, Michelle Chamblee, Cheng Chih Hsu, Fei Jiang, Phylip Chen, Yuexiu Zhang, Xueya Liang, Amal O Amer, Prosper N Boyaka, Estelle Cormet-Boyaka and 2 more

Abstract read
In one paragraph

Article in mBio, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jiayu Xu *Department of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Michelle Chamblee *Department of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Cheng Chih Hsu *Department of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Fei JiangDepartment of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Phylip ChenCenter for Microbe and Immunity Research, Abigail Wexner Research Institute, Nationwide Children's Hospital, Columbus, Ohio, USA.
Yuexiu ZhangDepartment of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Xueya LiangDepartment of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Amal O AmerDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, Ohio, USA.
Prosper N BoyakaDepartment of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Estelle Cormet-BoyakaDepartment of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.
Mark E PeeplesCenter for Microbe and Immunity Research, Abigail Wexner Research Institute, Nationwide Children's Hospital, Columbus, Ohio, USA.ORCID 0000-0002-4582-317X
Jianrong LiDepartment of Veterinary Biosciences, The Ohio State University, Columbus, Ohio, USA.ORCID 0000-0002-7130-1084

Funding

Role of the Non-canonical Inflammasome in SARS-CoV-2-mediated Pathology and CoagulopathyP01AI175399 · NIAID · OHIO STATE UNIVERSITY · PI Amal O Amer, Estelle A Cormet-Boyaka · 2024 to 2026
$12.0M
Respiratory Syncytial Virus Targeting of the Human Airway EpitheliumR01AI093848 · NIAID · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI PEEPLES, MARK E. · 2012 to 2023
$3.8M
RNA epigenetic modifications in SARS-CoV-2R01AI185617 · NIAID · OHIO STATE UNIVERSITY · PI Jianrong Li, Mark E. Peeples · 2025 to 2026
$1.1M
RNA internal 2’-O methylation in SARS-CoV-2R21AI180667 · NIAID · OHIO STATE UNIVERSITY · PI LI, JIANRONG · 2024 to 2025
$453k
NIH HHS P01AI175399NIH HHS R01AI093848NIH HHS R01AI185617NIH HHS R21AI180667NIH HHS U19AI42733
6 · The paper itself

Abstract

Since the COVID-19 pandemic, several reverse genetics platforms for SARS-CoV-2 have been established. In general, a plasmid-based reverse genetics system is stable and easy to manipulate, distribute, and store. However, traditional methods for the assembly of a large viral genome in a plasmid rely on natural and artificially engineered restriction sites, which are inefficient, time-consuming, labor-intensive, and frequently not successful. Here, we developed a yeast-based homologous recombination system that allows the assembly of the SARS-CoV-2 genome as a cDNA in a bacterial artificial chromosome (BAC) plasmid in a single step. The entire protocol from cDNA construction to virus rescue is simple, rapid, accurate, highly efficient, and can be completed in 2 weeks. Using this system, we have quickly generated recombinant SARS-CoV-2 (rSARS-CoV-2) WA1, Omicron BA.2.86, and Omicron JN.1 viruses expressing mCherry, green fluorescent protein (GFP), and NanoLuc luciferase (Nluc) reporters. Insertion of these reporter genes does not significantly alter the replication of SARS-CoV-2 in cell culture. We also compared the replication kinetics of rSARS-CoV-2-WA1, BA.2.86, and JN.1 reporter viruses in

Indexed as

Epithelial CellsReverse GeneticsSARS-CoV-2AnimalsBronchiChlorocebus aethiopsChromosomes, Artificial, BacterialCOVID-19Genome, ViralHumansPlasmidsSaccharomyces cerevisiaeVirus Replicationrapid reverse genetics systemSARS-CoV-2virus spread

Identifiers

PMID42112831
PMCPMC13251420

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.