Evidence map›Paper›PMID 42112809›Full record

Observational studymSystems2026

Stool microbial composition is associated with recent and future diarrhea and fever events in breastfed Danish infants.

Laurynne C Coates, David H Storms, Sarah S Spearman, Setareh Shahab-Ferdows, Sophie Hilario Christensen, Jack I Lewis, Christian Mølgaard, Kim F Michaelsen, Lindsay H Allen, Danielle G Lemay and 1 more

Abstract readMulticenter StudyObservational Study
In one paragraph

Observational study in mSystems, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Laurynne C CoatesU.S. Department of Agriculture-Agriculture Research Service, Western Human Nutrition Research Center, Davis, California, USA.ORCID 0000-0002-8325-107X
David H StormsU.S. Department of Agriculture-Agriculture Research Service, Western Human Nutrition Research Center, Davis, California, USA.
Sarah S SpearmanU.S. Department of Agriculture-Agriculture Research Service, Western Human Nutrition Research Center, Davis, California, USA.
Setareh Shahab-FerdowsU.S. Department of Agriculture-Agriculture Research Service, Western Human Nutrition Research Center, Davis, California, USA.
Sophie Hilario ChristensenDepartment of Nutrition, Exercise, and Sports, University of Copenhagen, Copenhagen, Denmark.
Jack I LewisDepartment of Nutrition, Exercise, and Sports, University of Copenhagen, Copenhagen, Denmark.
Christian MølgaardDepartment of Nutrition, Exercise, and Sports, University of Copenhagen, Copenhagen, Denmark.
Kim F MichaelsenDepartment of Nutrition, Exercise, and Sports, University of Copenhagen, Copenhagen, Denmark.
Lindsay H AllenU.S. Department of Agriculture-Agriculture Research Service, Western Human Nutrition Research Center, Davis, California, USA.
Danielle G LemayU.S. Department of Agriculture-Agriculture Research Service, Western Human Nutrition Research Center, Davis, California, USA.ORCID 0000-0003-3318-0485
Mary E KableU.S. Department of Agriculture-Agriculture Research Service, Western Human Nutrition Research Center, Davis, California, USA.ORCID 0000-0002-5485-6539

Funding

Bill and Melinda Gates Foundation OPP1148405, INV-002300USDA Agricultural Research Service 2032-51530-026-00D
6 · The paper itself

Abstract

Gastroenteritis is an important cause of ailment among infants in high-income countries, including Denmark. There are many cases of diarrhea among Danish children for which no etiological agent is detected. This study investigated the associations between gastroenteritis-related morbidities (diarrhea, fever, and vomiting) and gut microbial community in well-nourished, breastfeeding Danish infants. Infant stool samples, morbidity questionnaires, and diet/breastfeeding questionnaires were collected at three time points during the first 8.5 months of life. The V4-V5 region of the 16S rRNA gene was amplified from stool DNA extracts, sequenced with Illumina MiSeq, and analyzed using QIIME2. PERMANOVA, linear mixed-effects modeling, and ANCOM-BC2 were used to identify associations between infant gut microbiome and gastroenteritis-related morbidities across all visits. Logistic regression and random forest models were employed to determine whether early gut microbial alpha diversity or abundance, respectively, could predict morbidity later in infancy. Alpha diversity was negatively associated with diarrhea. IMPORTANCE: Gastroenteritis continues to cause much morbidity among infants in high-income countries, and the relationship with the gut microbiome is not fully understood, especially for well-nourished and breastfeeding infants. In the study presented here, infant stool Staphylococcales abundance (comprised of

Indexed as

Breast FeedingDiarrheaFecesFeverGastrointestinal MicrobiomeDenmarkFemaleHumansInfantInfant, NewbornMaleRNA, Ribosomal, 16SRNA, Ribosomal, 16SdiarrheafeverGranulicatellagut microbiotaHaemophilusinfantlogistic regressionrandom forest model

Identifiers

PMID42112809
PMCPMC13288990

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.