Evidence map›Paper›PMID 42111293›Full record

ArticleISME communications2026

Root traits correlate with crop rhizosphere microbiome diversity independent of legume relatedness.

Justin D Stewart, Malin Klein, Sébastien Jaupitre, Loreto Oyarte-Galvez, Lemeng Dong, Harro J Bouwmeester, E Toby Kiers, Vasilis Kokkoris, James T Weedon

Abstract read
In one paragraph

Article in ISME communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Justin D StewartSection of Ecology and Evolution, Amsterdam Institute for Life and Environment, Vrije Universiteit Amsterdam, Amsterdam 1081 HV, North Holland, The Netherlands.ORCID https://orcid.org/0000-0002-7812-5095
Malin KleinSection of Ecology and Evolution, Amsterdam Institute for Life and Environment, Vrije Universiteit Amsterdam, Amsterdam 1081 HV, North Holland, The Netherlands.ORCID https://orcid.org/0000-0002-6500-047X
Sébastien JaupitrePlant Hormone Biology, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam 1012 WX, North Holland, The Netherlands.ORCID https://orcid.org/0009-0001-7740-9803
Loreto Oyarte-GalvezSection of Ecology and Evolution, Amsterdam Institute for Life and Environment, Vrije Universiteit Amsterdam, Amsterdam 1081 HV, North Holland, The Netherlands.ORCID https://orcid.org/0000-0001-7570-8431
Lemeng DongPlant Hormone Biology, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam 1012 WX, North Holland, The Netherlands.ORCID https://orcid.org/0000-0002-1435-1907
Harro J BouwmeesterPlant Hormone Biology, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam 1012 WX, North Holland, The Netherlands.ORCID https://orcid.org/0000-0003-0907-2732
E Toby KiersSection of Ecology and Evolution, Amsterdam Institute for Life and Environment, Vrije Universiteit Amsterdam, Amsterdam 1081 HV, North Holland, The Netherlands.ORCID https://orcid.org/0000-0002-0597-1653
Vasilis KokkorisSection of Systems Ecology, Amsterdam Institute for Life and Environment, Vrije Universiteit Amsterdam, Amsterdam, 1081 HV, North Holland, The Netherlands.ORCID https://orcid.org/0000-0002-1667-0493
James T WeedonSection of Systems Ecology, Amsterdam Institute for Life and Environment, Vrije Universiteit Amsterdam, Amsterdam, 1081 HV, North Holland, The Netherlands.ORCID https://orcid.org/0000-0002-7811-5719

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Predicting the composition of rhizosphere microbiomes has become increasingly important for sustainable agriculture. A key open question is whether a plant's rhizosphere community is shaped more by the specific traits or host phylogeny, under different soil conditions. We conducted a greenhouse experiment on 15 legume species, including three pairs of crop-wild relative pairs, under different phosphorus conditions. We then sequenced the bacterial and fungal rhizosphere communities. Using Bayesian models, we found rhizosphere composition was shaped by individual species identity, independent of host phylogeny (intraclass correlation = 0.40-0.79). This suggests that closely related plants do not necessarily share similar rhizosphere microbiomes. These patterns remained consistent across host intraspecific variation and nutrient treatments. Using a custom-built root imaging platform, we quantified root architectural traits and applied machine learning to correlate with rhizosphere community composition (R

Indexed as

Bayesianco-evolutiondomesticationmachine learningphylogenypredictive modelrhizosphereroot traits

Identifiers

PMID42111293
PMCPMC13155103

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.