Evidence map›Paper›PMID 42109247›Full record

ArticleNucleic acids research2026

Linker-mediated conformational coupling drives lesion recognition in MutY glycosylase.

Hyeonjun Kim, Manho Lim, Youngshang Pak

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Structural Basis for Nucleobase Activation by the Adenine DNA Glycosylase MutY.Chembiochem : a European journal of chemical biology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Hyeonjun KimDepartment of Chemistry and Institute of Functional Materials, Pusan National University, Busan 46241, South Korea.
Manho LimDepartment of Chemistry and Institute of Functional Materials, Pusan National University, Busan 46241, South Korea.
Youngshang PakDepartment of Chemistry and Institute of Functional Materials, Pusan National University, Busan 46241, South Korea.ORCID 0000-0002-7083-8672

Funding

National Research Foundation of Korea RS-2025-16071884
6 · The paper itself

Abstract

Maintaining genome stability requires accurate recognition of oxidative DNA damage. MutY glycosylase prevents mutagenic G:C→T:A transversions by excising adenine mispaired with 8-oxoguanine (8OG). While crystal structures have captured two endpoint states-the encounter complex (EC) and the lesion recognition complex (LRC)-the dynamic steps connecting these states have remained unresolved. Using large-scale enhanced-sampling molecular dynamics simulations, we mapped the free energy landscapes of lesion recognition and identified a dominant pathway in which adenine and 8OG undergo synchronized glycosidic rotations orchestrated by a flexible interdomain linker. This linker coordinates adenine flipping, dual base isomerization, and interdomain rearrangements into a unified, streamlined process that secures extrahelical adenine in a catalytically competent LRC state. These findings reveal a previously unrecognized mechanistic framework for MutY and related glycosylases with flexible linkers, highlighting how such linkers guide lesion interrogation and reinforce genome integrity.

Indexed as

Bacterial ProteinsDNA GlycosylasesAdenineDNADNA DamageGuanineMolecular Dynamics SimulationProtein Conformation8-hydroxyguanineAdenineBacterial ProteinsDNADNA GlycosylasesGuaninemutY adenine glycosylase

Identifiers

PMID42109247
PMCPMC13158670

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.