Evidence map›Paper›PMID 42107973›Full record

ArticleNucleic acids research2026

MBD8 is required for LDL2-mediated transcriptional repression downstream of H3K9me2 in Arabidopsis.

Shusei Mori, Akihisa Osakabe, Juliarni, Yuriko Tanaka, Mami Hirayama, Soichi Inagaki, Tetsuji Kakutani

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Shusei MoriDepartment of Biological Sciences, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0002-2419-3041
Akihisa OsakabeInstitute for Advanced Academic Research, Chiba University, Chiba 263-8522, Japan.ORCID 0000-0002-2526-3398
JuliarniDepartment of Biological Sciences, The University of Tokyo, Tokyo 113-0033, Japan.
Yuriko TanakaDepartment of Biological Sciences, The University of Tokyo, Tokyo 113-0033, Japan.
Mami HirayamaDepartment of Biological Sciences, The University of Tokyo, Tokyo 113-0033, Japan.
Soichi InagakiDepartment of Biological Sciences, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0003-4090-826X
Tetsuji KakutaniDepartment of Biological Sciences, The University of Tokyo, Tokyo 113-0033, Japan.ORCID 0000-0002-6137-4474

Funding

Human Frontier Science Program RGP0025/2021Japan Science and Technology Agency JPMJCR15O1Japan Science and Technology Agency JPMJCR20S6Japan Society for the Promotion of Science 20H05913Japan Society for the Promotion of Science 21H04977Japan Society for the Promotion of Science 23H00365Japan Society for the Promotion of Science 23K23565Japan Society for the Promotion of Science 24H01351Japan Society for the Promotion of Science 24K02002Japan Society for the Promotion of Science 24K02077Japan Society for the Promotion of Science 24K21268Japan Society for the Promotion of Science 24K21926Japan Society for the Promotion of Science 25H01300Japan Society for the Promotion of Science 25H02544Japan Society for the Promotion of Science 25K02252Japan Society for the Promotion of Science 25K02258JSPS 21H04977JSPS 23H00365
6 · The paper itself

Abstract

Histone H3 lysine 9 methylation (H3K9me) is a conserved epigenetic mark for transcriptional gene repression. In Arabidopsis, H3K9 dimethylation (H3K9me2) promotes the removal of a transcription-associated mark, H3K4 monomethylation (H3K4me1), and this process within genes requires the histone demethylase LDL2. However, how LDL2 specifically functions in genes that accumulate H3K9me2 remains unknown. Here, we show that methyl-CpG-binding domain protein 8 (MBD8) binds to LDL2 and plays a role in H3K4me1 removal and transcriptional gene repression downstream of H3K9me2. MBD8 preferentially binds GC-poor DNA, regardless of its cytosine methylation status. Interestingly, LDL2 protein levels were significantly reduced in the mbd8 mutant background, suggesting that MBD8 stabilizes the LDL2 protein, facilitating H3K4me1 removal and the transcriptional repression of H3K9me2-marked genes. The domain necessary for the MBD8-LDL2 interaction is conserved among plants. Notably, MBD8 lacking the MBD domain still complemented the effect of MBD8 on H3K4me1 levels and the developmental phenotypes. We propose that MBD proteins have diverse functions beyond their methylated DNA-binding capabilities.

Indexed as

ArabidopsisArabidopsis ProteinsDNA-Binding ProteinsGene Expression Regulation, PlantHistone DemethylasesHistonesTranscription FactorsLysineMethylationMutationProtein BindingTranscription, GeneticArabidopsis ProteinsAT1G52740 protein, ArabidopsisDNA-Binding ProteinsH3K9me2Histone DemethylasesHistonesLysineTranscription Factors

Identifiers

PMID42107973
PMCPMC13157976

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.