Evidence map›Paper›PMID 42103764›Full record

ArticleScientific data2026

Haplotype-resolved genome assembly of a cultivated variety of Zizania latifolia (Zhejiao7).

Jun-Cheng Wu, Fei Xu, Wan-Long Jiang, Hui-Shan Shao, Jing-Tian Tang, Ya-Fen Zhang, Zi-Hong Ye

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jun-Cheng WuKey Laboratory of Microbiological Metrology, Measurement & Bio-Product Quality Security, State Administration for Market Regulation, College of Life Sciences, China Jiliang University, Hangzhou, 310018, P. R. China.
Fei XuState Key Laboratory for Quality and Safety of Agro-Products, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310018, P. R. China.ORCID http://orcid.org/0000-0003-1273-6800
Wan-Long JiangKey Laboratory of Microbiological Metrology, Measurement & Bio-Product Quality Security, State Administration for Market Regulation, College of Life Sciences, China Jiliang University, Hangzhou, 310018, P. R. China.
Hui-Shan ShaoKey Laboratory of Microbiological Metrology, Measurement & Bio-Product Quality Security, State Administration for Market Regulation, College of Life Sciences, China Jiliang University, Hangzhou, 310018, P. R. China.
Jing-Tian TangKey Laboratory of Microbiological Metrology, Measurement & Bio-Product Quality Security, State Administration for Market Regulation, College of Life Sciences, China Jiliang University, Hangzhou, 310018, P. R. China.
Ya-Fen ZhangKey Laboratory of Microbiological Metrology, Measurement & Bio-Product Quality Security, State Administration for Market Regulation, College of Life Sciences, China Jiliang University, Hangzhou, 310018, P. R. China. zyfzjhzyh@163.com.
Zi-Hong YeKey Laboratory of Microbiological Metrology, Measurement & Bio-Product Quality Security, State Administration for Market Regulation, College of Life Sciences, China Jiliang University, Hangzhou, 310018, P. R. China. zhye@cjlu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The long-term reliance on vegetative propagation combined with continuous infections by Ustilago esculenta, has resulted in substantial genetic alteration in cultivated varieties of Zizania latifolia. In this study, we focus on the 'Zhejiao7' variety, with its characteristic of early maturation in both the summer and autumn seasons. We present the first haplotype-resolved genome assembly of the Jiaobai variety 'Zhejiao7', with the majority of chromosomes sequenced to the T2T level. With the mixed application of PacBio HiFi, Nanopore, Illumina, and Hi-C technologies, we assembled two haplotypes (Hap1: 610.06 Mb, Hap2: 585.52 Mb), each with 17 chromosomes. Functional annotation identified ~78% of the protein-coding genes. This high-quality assembly provides insights into domestication, agronomic traits, and stem expansion, facilitating research on Jiaobai's bioactive compounds and medicinal properties and supporting advancements in agriculture and biomedicine.

Indexed as

Genome, PlantHaplotypesPoaceae

Identifiers

PMID42103764
PMCPMC13369988

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.