Evidence map›Paper›PMID 42099280›Full record

ArticleGenome biology and evolution2026

Comparative Transcriptomics Reveals an Extracellular Worm Argonaute as an Ancestral Regulator of LTR Retrotransposons.

Isaac Martinez-Ugalde, Kyriaki Neophytou, Yenetzi Villagrana-Pacheco, Adriana Orrego Durañona, Lewis Stevens, Xiaochen Du, Rowan Bancroft, Jessica L Hall, Amy B Pedersen, Mark Blaxter and 2 more

Abstract readComparative Study
In one paragraph

Article in Genome biology and evolution, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Isaac Martinez-UgaldeInstitute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID 0000-0001-7866-3216
Kyriaki NeophytouInstitute of Immunology & Infection Research, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID 0000-0003-4311-9776
Yenetzi Villagrana-PachecoInstitute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID 0000-0002-5297-3221
Adriana Orrego DurañonaInstitute of Cell Biology, School of Biological Sciences, The University of Edinburgh, Edinburgh, UK.ORCID 0000-0002-0997-9206
Lewis StevensTree of Life, Wellcome Sanger Institute, Hinxton, UK.ORCID 0000-0002-6075-8273
Xiaochen DuInstitute of Immunology & Infection Research, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID 0009-0002-3518-6389
Rowan BancroftInstitute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID 0000-0002-8637-0410
Jessica L HallInstitute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID 0000-0001-8040-765X
Amy B PedersenInstitute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID 0000-0002-1385-1360
Mark BlaxterTree of Life, Wellcome Sanger Institute, Hinxton, UK.ORCID 0000-0003-2861-949X
Amy H BuckInstitute of Immunology & Infection Research, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID 0000-0003-2645-7191
Cei Abreu-GoodgerInstitute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK.ORCID 0000-0001-8302-9893

Funding

Consejo Nacional de Ciencia y Tecnologia-Mexico (CONACyT) 896776Leverhulme RPG-2019-404Postgraduate Scholarship-Darwin Trust of EdinburghWellcome Trust PhD Programme 101002385Wellcome Trust PhD Programme 108905/Z/15/Z
6 · The paper itself

Abstract

Safeguarding the genome from non-self-elements is essential for development, reproduction, and aging. One of the major threats to genomic integrity is transposable elements (TEs), which can be post-transcriptionally silenced through small RNAs (sRNAs) and argonaute proteins. Recent work suggests TE-derived sRNAs may also act as virulence factors in host-pathogen interactions. During infection, the intestinal parasite Heligmosomoides bakeri secretes a single argonaute protein (exWAGO) and a wide variety of TE-derived sRNAs. Although exWAGO is highly expressed, conserved, and secreted by parasitic nematodes, its function and sRNA guide preference remain unclear. Using comparative transcriptomics of the sRNAs bound to exWAGO within parasites of rodents, livestock, and humans, and its orthologs in C. elegans, we found that exWAGO is capable of loading sRNAs produced from all classes of TEs in addition to some protein-coding and noncoding transcripts. However, our results suggest that the ancestral endogenous function of exWAGO was likely linked to LTR retrotransposon regulation. To understand how this relates to potential extracellular functions of exWAGO, we also examined the sRNAs bound to exWAGO secreted by H. bakeri in both vesicular and nonvesicular forms. Extracellular exWAGO preferentially loads sRNA guides derived from nonautonomous and fragmented LTRs, suggesting the existence of adaptable reservoirs of regulatory sRNAs with potential roles in cross-species RNA communication. Together, our results show that exWAGO is part of an evolutionarily conserved pathway for LTR retrotransposon regulation, while preferentially utilizing degenerated elements as sources of secreted sRNAs.

Indexed as

Argonaute ProteinsHelminth ProteinsRetroelementsTerminal Repeat SequencesAnimalsCaenorhabditis elegansEvolution, MolecularTranscriptomeArgonaute ProteinsHelminth ProteinsRetroelementsargonauteparasiteretrotransposonsRNA communicationRNA interference

Identifiers

PMID42099280
PMCPMC13195028

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.