Evidence map›Paper›PMID 42098360›Full record

ArticleCommunications biology2026

Early transcriptional divergence underlies cell fate bias in bovine embryos.

Hinata Koyama, Daisuke Mashiko, Pilar Ferré-Pujol, Utano Suzuki, Rei Morita, Masahiro Kaneda, Atchalalt Khurchabilig, Haruhisa Tsuji, Tatsuma Yao, Satoshi Sugimura

Abstract read
In one paragraph

Article in Communications biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Species-specific roles of SP1 in bovine and human embryonic genome activation and early embryonic development.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hinata KoyamaBiological Production, Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Daisuke MashikoImmunology Frontier Research Center, Osaka University, Osaka, Japan.ORCID http://orcid.org/0000-0003-3927-3076
Pilar Ferré-PujolBiological Production, Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Utano SuzukiBiological Production, Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Rei MoritaBiological Production, Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Masahiro KanedaDepartment of Veterinary Medicine, Faculty of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Atchalalt KhurchabiligBiological Production, Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Haruhisa TsujiBiological Production, Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Tatsuma YaoResearch and Development Center, Fuso Pharmaceutical Industries Ltd, Osaka, Japan.
Satoshi SugimuraBiological Production, Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan. satoshis@cc.tuat.ac.jp.ORCID http://orcid.org/0000-0002-6473-5941

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) JP23K23760
6 · The paper itself

Abstract

Developmental plasticity, or the ability of early embryonic cells to contribute to multiple lineages, is traditionally considered equal among sister blastomeres during early cleavage. However, divergence may occur earlier than expected. We performed single-cell RNA sequencing of bovine embryos from the 2- to 8-cell stages to examine transcriptional asymmetry. While gene expression was uniform at the 2-cell stage, variability increased at the 4-cell stage and became pronounced by the 8-cell stage. At this stage, blastomeres showed heterogeneity in MAPK pathway genes (e.g., RAC1, MAPK14) and the trophectoderm marker CDX2. These differences were associated with blastomere size; as larger blastomeres exhibited molecular and functional features associated with an increased propensity to generate trophectoderm cells. Thus, sister blastomeres exhibited progressive transcriptional divergence prior to compaction in bovine embryos, and these early differences may influence subsequent lineage trajectories.

Indexed as

BlastomeresCell DifferentiationCell LineageEmbryo, MammalianGene Expression Regulation, DevelopmentalTranscription, GeneticAnimalsCattleEmbryonic DevelopmentFemaleSingle-Cell Gene Expression Analysis

Identifiers

PMID42098360
PMCPMC13153229

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.